def test_plot_model_key_dependencies_scatter_plot(self):
ml = self.ml #only veg
target_key = "scalar_func_phot"
sublist = ModelList([el for el in ml if el.has_key(target_key)])
fig = plt.figure()
ax = fig.add_subplot(1, 1, 1)
sublist.plot_model_key_dependencies_scatter_plot(target_key, ax)
fig.savefig("plot.pdf")
ax = fig.add_subplot(1, 1, 1)
def test_create_old_overview_report(self):
# fixme:
# The tested method is deprecated and should be replaced by templates as soon as possible.
# we create a target directory populated with only a few files and create a overview html from it
d = defaults()
#sp=d['paths']['tested_records']
sp = d['paths']['tested_records'].parent.joinpath('VerosTestModels')
src_dir_name = 'localDataBase'
src_dir_path = Path(src_dir_name)
src_dir_path.mkdir()
rec_list = [rec for rec in sp.glob('*.yaml')] #[0:2]
for rec in rec_list:
src = str(sp.joinpath(rec))
target = (src_dir_name)
shutil.copy(src, src_dir_name)
ml = ModelList.from_dir_path(src_dir_path)
target_dir_path = Path('.').joinpath('html')
targetFileName = 'overview.html'
create_overview_report(ml, target_dir_path, targetFileName)
targetPath = target_dir_path.joinpath(targetFileName)
self.assertTrue(targetPath.exists())
def setUp(self):
yaml_str = """\
model:
- environmental_paramters:
- T:
key: Temperature
- f:
key: foliage
- components:
- b:
exprs: b = Matrix(3,1, [1, 0, 1])
key: input_vector
- u:
exprs: u=T*f
key: scalar_func_phot
- f_s:
exprs: "f_s = u*b"
key: state_vector_derivative
"""
model_0 = IncompleteModel(yaml_str, "mod0")
model_0.sections, model_0.section_titles, model_0.complete_dict = load_sections_and_titles(
model_0.complete_dict)
model_0.df = load_df(model_0.complete_dict, model_0.sections)
model_0.syms_dict, model_0.exprs_dict, model_0.symbols_by_type = load_expressions_and_symbols(
model_0.df)
model_0.set_component_keys()
yaml_str = """\
model:
- environmental_paramters:
- a:
- T:
key: Temperature
- f:
key: roots
exprs: f=5*a
- components:
- b:
exprs: b = Matrix(3,1, [1, 0, 1])
key: input_vector
- u:
exprs: u=T*f
key: scalar_func_phot
- f_s:
exprs: "f_s = u*b"
key: state_vector_derivative
"""
model_1 = IncompleteModel(yaml_str, "mod1")
model_1.sections, model_1.section_titles, model_1.complete_dict = load_sections_and_titles(
model_1.complete_dict)
model_1.df = load_df(model_1.complete_dict, model_1.sections)
model_1.syms_dict, model_1.exprs_dict, model_1.symbols_by_type = load_expressions_and_symbols(
model_1.df)
model_1.set_component_keys()
self.ml = ModelList([model_0, model_1])
def table(request):
from bgc_md.ModelList import ModelList
from bgc_md.reports import defaults
d=defaults()
source_dir_path=d['paths']['tested_records']
ml=ModelList.from_dir_path(src_dir_path)
target_dir_path=Path('.').joinpath('html')
targetFileName='table.html'
rel=ml.create_overview_table(target_dir_path,targetFileName)
return HttpResponse('Test')
def test_website_from_template(self):
d = defaults()
sp = d['paths']['tested_records'].parent.joinpath('TestModels_1')
model_list = ModelList.from_dir_path(sp)
list_tp = d['paths']['report_templates'].joinpath(
'multiple_model', 'Website.py')
#rel=render(list_tp,model_list=model_list)
rel = render(list_tp, model_list)
target_dir_path = Path('.')
target_dir_path.mkdir(parents=True, exist_ok=True)
targetFileName = 'overview.html'
rel.write_pandoc_html(target_dir_path.joinpath(targetFileName))
def test_create_overview_table(self):
# we create a target directory populated with only a few files and create a overview html from it
d = defaults()
sp = d['paths']['tested_records']
src_dir_name = 'localDataBase'
src_dir_path = Path(src_dir_name)
src_dir_path.mkdir()
rec_list = [rec for rec in sp.glob('*.yaml')][0:1]
for rec in rec_list:
print(rec)
src = (sp.joinpath(rec)).as_posix()
target = (src_dir_name)
shutil.copy(src, src_dir_name)
ml = ModelList.from_dir_path(src_dir_path)
target_dir_path = Path('.').joinpath('html')
rel = ml.create_overview_table(target_dir_path)
targetFileName = 'table.html'
targetPath = target_dir_path.joinpath(targetFileName)
rel.write_pandoc_html(targetPath)
print(targetPath)
self.assertTrue(targetPath.exists())
def setUp(self):
this = Path(__file__).parents[1] #the package dir
vegModelPath = defaults()['paths'][
'veg'] ### Fix me!!! Temporarily changed Vegetation for Test
self.ml = ModelList.from_dir_path(vegModelPath)