def test_eligible_subject4(self):
"""Assert 'eligible' and 'is' flags if passes enrollment checklist for BHS and household is enrolled."""
# eligible member
household_member = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=25,
study_resident='Yes',
initials='EE')
# who is an eligible subject
EnrollmentChecklistFactory(household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
initials=household_member.initials,
part_time_resident='Yes')
# who is consented
SubjectConsentFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
first_name='ERIKFIRST',
last_name='ERIKLAST',
initials=household_member.initials,
)
self.assertTrue(household_member.eligible_member)
self.assertTrue(household_member.eligible_subject)
self.assertFalse(household_member.eligible_htc)
self.assertTrue(household_member.is_consented)
self.assertFalse(household_member.is_htc_only)
def enroll_household(self):
household_member = HouseholdMemberFactory(
first_name='ERIK',
initials='EW',
age_in_years=18,
study_resident='Yes',
household_structure=self.source_household_structure)
enrollment_checklist = EnrollmentChecklistFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=18),
guardian='No',
initials=household_member.initials,
part_time_resident='Yes')
from bhp066.apps.bcpp_subject.tests.factories import SubjectConsentFactory
self.subject_consent = SubjectConsentFactory(
household_member=enrollment_checklist.household_member,
first_name="ERIK",
last_name='WERIK',
gender='M',
dob=date.today() - relativedelta(years=18),
initials=household_member.initials,
study_site=self.study_site,
)
self.assertEqual(self.subject_consent.household_member.member_status,
BHS)
self.assertTrue(
self.subject_consent.household_member.household_structure.enrolled)
return household_member
def test_eligible_subject3(self):
"""Assert 'eligible' and 'is' flags if fails enrollment checklist for BHS and household is enrolled.
Fails eligibility but is eligible for HTC by age."""
# eligible member
household_member = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=25,
study_resident='Yes',
initials='EE')
# who is an eligible subject
EnrollmentChecklistFactory(household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
initials=household_member.initials,
part_time_resident='Yes')
# who is consented
SubjectConsentFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
first_name='ERIKFIRST',
last_name='ERIKLAST',
initials=household_member.initials,
)
# the household is now enrolled
self.assertTrue(
household_member.household_structure.household.enrolled)
# an ineligible member
household_member = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=65,
study_resident='No')
# who fails eligibility ...should not be able get to this via the interface
EnrollmentChecklistFactory(household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=65),
initials=household_member.initials,
part_time_resident='No')
# should only be eligible_htc
self.assertFalse(household_member.eligible_member)
self.assertFalse(household_member.eligible_subject)
self.assertTrue(household_member.eligible_htc)
self.assertFalse(household_member.is_consented)
self.assertFalse(household_member.is_htc_only)
def test2(self):
"""Assert handles a member consented"""
household_member = HouseholdMemberFactory(
inability_to_participate=NOT_APPLICABLE,
first_name='ERIK',
initials='EW',
age_in_years=64,
study_resident='Yes',
household_structure=self.household_structure)
self.enrollment_checklist(household_member)
# household_member.member_status = BHS_ELIGIBLE
subject_consent = SubjectConsentFactory(
household_member=household_member,
initials=household_member.initials,
last_name='WWW',
dob=date.today() - relativedelta(years=64),
identity='123456789',
identity_type='OMANG')
subject = Subject(household_member)
self.assertEqual(subject.subject_consent, subject_consent)
def test_enrolled2(self):
"""Assert enrolled is True if eligible member consents."""
SurveyFactory()
plot = PlotFactory(community=self.mapper().map_area,
household_count=3,
status='residential_habitable')
for household in Household.objects.filter(plot=plot):
household_log = HouseholdLog.objects.get(
household_structure__household=household)
household_log_entry = HouseholdLogEntryFactory(
household_log=household_log)
household_structure = household_log.household_structure
RepresentativeEligibilityFactory(
household_structure=household_structure)
HouseholdMemberFactory(household_structure=household_structure,
age_in_years=10)
HouseholdMemberFactory(household_structure=household_structure,
age_in_years=74)
household_member = HouseholdMemberFactory(
household_structure=household_structure,
age_in_years=25,
initials='NN')
HouseholdMemberFactory(household_structure=household_structure,
age_in_years=50)
household_structure = HouseholdStructure.objects.get(
pk=household_structure.pk)
dob = date.today() - relativedelta(years=25)
enrollment_checklist = EnrollmentChecklistFactory(
household_member=household_member,
report_datetime=household_member.created,
dob=dob,
initials='NN')
self.assertFalse(household_structure.enrolled)
self.assertTrue(enrollment_checklist.is_eligible)
household_member = HouseholdMember.objects.get(pk=household_member.pk)
SubjectConsentFactory(household_member=household_member,
dob=dob,
initials='NN')
household_structure = HouseholdStructure.objects.get(
pk=household_structure.pk)
self.assertTrue(household_structure.enrolled)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(survey_name='BCPP Year 1') # see app_configuration
site_mappers.autodiscover()
mapper = site_mappers.get(site_mappers.get_as_list()[0])
self.community = mapper().get_map_area()
gps_degrees_s, gps_minutes_s, gps_degrees_e, gps_minutes_e = mapper().test_location
self.plot = PlotFactory(community=self.community,
gps_degrees_s=gps_degrees_s,
gps_minutes_s=gps_minutes_s,
gps_degrees_e=gps_degrees_e,
gps_minutes_e=gps_minutes_e,
household_count=2,
status='residential_habitable')
self.household1 = Household.objects.filter(plot=self.plot).order_by('created')[0]
self.household_structure1 = HouseholdStructure.objects.get(household=self.household1, survey=self.survey1)
self.household2 = Household.objects.filter(plot=self.plot).order_by('created')[1]
self.household_member1 = HouseholdMemberFactory(household_structure=self.household_structure1,
age_in_years=26,
present_today='Yes',
member_status='RESEARCH')
self.household_member2 = HouseholdMemberFactory(household_structure=self.household_structure1, age_in_years=36, present_today='Yes')
self.household_member3 = HouseholdMemberFactory(household_structure=self.household_structure1, age_in_years=12, present_today='Yes')
self.household_member4 = HouseholdMemberFactory(household_structure=self.household_structure1, age_in_years=99, present_today='Yes')
self.dashboard_type = 'household'
self.dashboard_model = 'household'
self.dashboard_id = self.household1.pk
self.household_member1.eligible_subject = True
self.subject_consent = SubjectConsentFactory(
household_member=self.household_member1,
first_name=self.household_member1.first_name,
initials=self.household_member1.initials,
registered_subject=self.household_member1.registered_subject)
def enroll_household(self, household_member=None):
if not household_member:
household_member = HouseholdMemberFactory(
first_name='ERIK',
initials='EW',
age_in_years=18,
present_today='Yes',
study_resident='Yes',
household_structure=self.household_structure,
inability_to_participate=NOT_APPLICABLE)
self.assertEquals(household_member.member_status, BHS_SCREEN)
enrollment_checklist = EnrollmentChecklistFactory(
household_member=household_member,
report_datetime=datetime.today(),
gender='M',
dob=date.today() - relativedelta(years=18),
guardian='No',
initials=household_member.initials,
part_time_resident='Yes')
household_member = HouseholdMember.objects.get(
pk=enrollment_checklist.household_member.pk)
self.assertEquals(household_member.member_status, BHS_ELIGIBLE)
from bhp066.apps.bcpp_subject.tests.factories import SubjectConsentFactory
subject_consent = SubjectConsentFactory(
household_member=household_member,
registered_subject=household_member.registered_subject,
first_name=household_member.first_name,
last_name='WERIK',
gender=household_member.gender,
dob=date.today() - relativedelta(years=18),
initials=household_member.initials,
study_site=self.study_site,
)
household_member = HouseholdMember.objects.get(
pk=subject_consent.household_member.pk)
self.household_structure = household_member.household_structure
self.assertEquals(household_member.member_status, BHS)
self.assertTrue(self.household_structure.enrolled)
self.assertTrue(self.household_structure.household.enrolled)
self.assertTrue(self.household_structure.household.plot.bhs)
return household_member
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.study_site = StudySite.objects.get(site_code='01')
self.survey = Survey.objects.all()[0]
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
next_survey = Survey.objects.all().order_by('datetime_start')[1]
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=next_survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
self.female_dob = date(1989, 10, 10)
self.female_age_in_years = relativedelta(date.today(),
self.female_dob).years
self.female_first_name = 'ERIKA'
self.female_last_name = 'WAXON'
self.female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=self.female_age_in_years,
first_name=self.female_first_name,
initials=self.female_initials)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.assertEqual(self.household_member_female_T0.member_status,
'BHS_SCREEN')
self.enrollment_checklist_female = EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=self.female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
self.subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=self.female_dob,
first_name=self.female_first_name,
last_name=self.female_last_name,
initials=self.female_initials)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_female.subject_identifier)
enumeration_helper = EnumerationHelper(
self.household_structure.household, survey, next_survey)
self.household_member_female = enumeration_helper.create_member_on_target(
self.household_member_female_T0)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.locator_female_T0 = SubjectLocatorFactory(
subject_visit=self.subject_visit_female_T0,
registered_subject=self.registered_subject_female)
self.residency_mobility_female_T0 = ResidencyMobilityFactory(
subject_visit=self.subject_visit_female_T0)
microtube_panel = Panel.objects.get(name='Microtube')
aliquot_type = AliquotType.objects.all()[0]
self.subject_requisition_T0 = SubjectRequisitionFactory(
subject_visit=self.subject_visit_female_T0,
panel=microtube_panel,
aliquot_type=aliquot_type)
self.hiv_result_today_T0 = HivResultFactory(
subject_visit=self.subject_visit_female_T0, hiv_result=NEG)
class TestCorrectConsent(TestCase):
app_label = 'bcpp_subject'
community = 'test_community'
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.study_site = StudySite.objects.get(site_code='01')
self.survey = Survey.objects.all()[0]
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
next_survey = Survey.objects.all().order_by('datetime_start')[1]
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=next_survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
self.female_dob = date(1989, 10, 10)
self.female_age_in_years = relativedelta(date.today(),
self.female_dob).years
self.female_first_name = 'ERIKA'
self.female_last_name = 'WAXON'
self.female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=self.female_age_in_years,
first_name=self.female_first_name,
initials=self.female_initials)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.assertEqual(self.household_member_female_T0.member_status,
'BHS_SCREEN')
self.enrollment_checklist_female = EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=self.female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
self.subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=self.female_dob,
first_name=self.female_first_name,
last_name=self.female_last_name,
initials=self.female_initials)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_female.subject_identifier)
enumeration_helper = EnumerationHelper(
self.household_structure.household, survey, next_survey)
self.household_member_female = enumeration_helper.create_member_on_target(
self.household_member_female_T0)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.locator_female_T0 = SubjectLocatorFactory(
subject_visit=self.subject_visit_female_T0,
registered_subject=self.registered_subject_female)
self.residency_mobility_female_T0 = ResidencyMobilityFactory(
subject_visit=self.subject_visit_female_T0)
microtube_panel = Panel.objects.get(name='Microtube')
aliquot_type = AliquotType.objects.all()[0]
self.subject_requisition_T0 = SubjectRequisitionFactory(
subject_visit=self.subject_visit_female_T0,
panel=microtube_panel,
aliquot_type=aliquot_type)
self.hiv_result_today_T0 = HivResultFactory(
subject_visit=self.subject_visit_female_T0, hiv_result=NEG)
def test_lastname_and_initials(self):
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_last_name=self.female_last_name,
new_last_name='DIMSTAR',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(subject_consent.initials, 'ED')
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).initials, 'ED')
self.assertEquals(subject_consent.initials, 'ED')
self.assertEquals(subject_consent.last_name, 'DIMSTAR')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_firstname_and_initials(self):
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_first_name=self.female_first_name,
new_first_name='GAME',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).initials, 'GW')
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).initials, 'GW')
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).first_name, 'GAME')
self.assertEquals(subject_consent.first_name, 'GAME')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_dob(self):
hic = HicEnrollmentFactory(subject_visit=self.subject_visit_female_T0,
dob=self.female_dob)
new_dob = date(1988, 1, 1)
age_in_years = relativedelta(
self.subject_consent_female.consent_datetime, new_dob).years
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_dob=self.female_dob,
new_dob=new_dob,
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).age_in_years,
age_in_years)
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).dob, new_dob)
self.assertEquals(subject_consent.dob, new_dob)
self.assertEquals(
HicEnrollment.objects.get(
subject_visit=self.subject_visit_female_T0).dob, new_dob)
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
self.assertEquals(hic.user_modified, correct_consent.user_created)
def test_gender(self):
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_gender='F',
new_gender='M',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).gender, 'M')
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).gender, 'M')
self.assertEquals(subject_consent.gender, 'M')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_witness(self):
self.subject_consent_female.witness_name = 'DIMO'
self.subject_consent_female.save(update_fields=['witness_name'])
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_witness_name='DIMO',
new_witness_name='BIMO',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(subject_consent.witness_name, 'BIMO')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_to_unverify_consent(self):
self.subject_consent_female.witness_name = 'DIMO'
self.assertFalse(self.subject_consent_female.is_verified)
self.assertIsNone(self.subject_consent_female.is_verified_datetime)
self.assertIsNone(self.subject_consent_female.verified_by)
self.subject_consent_female.is_verified = True
self.subject_consent_female.is_verified_datetime = datetime(
2016, 4, 18, 10, 3, 42, 215477)
self.subject_consent_female.verified_by = 'ckgathi'
self.subject_consent_female.save(update_fields=[
'witness_name', 'verified_by', 'is_verified_datetime',
'is_verified'
])
self.assertTrue(self.subject_consent_female.is_verified)
self.assertEqual(self.subject_consent_female.is_verified_datetime,
datetime(2016, 4, 18, 10, 3, 42, 215477))
self.assertEqual(self.subject_consent_female.verified_by, 'ckgathi')
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_witness_name='DIMO',
new_witness_name='BIMO',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(subject_consent.witness_name, 'BIMO')
self.assertFalse(self.subject_consent_female.is_verified)
self.assertIsNone(self.subject_consent_female.is_verified_datetime)
self.assertIsNone(self.subject_consent_female.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_p3(self):
instances = []
plot = PlotFactory(community='test_community6',
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
household_structure = HouseholdStructure.objects.get(
survey=Survey.objects.all()[0])
representative_eligibility = RepresentativeEligibilityFactory(
household_structure=household_structure)
household_member = HouseholdMemberFactory(
household_structure=household_structure)
enrollment_checklist = EnrollmentChecklistFactory(
household_member=household_member,
initials=household_member.initials,
has_identity='Yes',
dob=date(1989, 01, 01))
self.assertTrue(enrollment_checklist.is_eligible)
instances.append(enrollment_checklist)
self.assertEqual(RegisteredSubject.objects.all().count(), 1)
registered_subject = RegisteredSubject.objects.all()[0]
site = StudySite.objects.all()[0]
subject_consent = SubjectConsentFactory(
study_site=site,
household_member=household_member,
registered_subject=household_member.registered_subject,
dob=enrollment_checklist.dob,
initials=enrollment_checklist.initials)
instances.append(subject_consent)
self.assertEqual(Appointment.objects.all().count(), 1)
appointment = Appointment.objects.get(
registered_subject=registered_subject)
subject_visit = SubjectVisitFactory(household_member=household_member,
appointment=appointment)
instances.append(subject_visit)
aliquot_type = AliquotType.objects.all()[0]
panel = Panel.objects.all()[0]
subjects_requisition = SubjectRequisitionFactory(
subject_visit=subject_visit,
panel=panel,
site=site,
aliquot_type=aliquot_type,
)
self.assertEqual(Aliquot.objects.all().count(), 0)
subjects_requisition.is_receive = True
subjects_requisition.is_receive_datetime = datetime.now()
subjects_requisition.save()
lab_profile = site_lab_profiles.get(
subjects_requisition._meta.object_name)
lab_profile().receive(subjects_requisition)
receive = Receive.objects.all()[0]
self.assertEqual(Aliquot.objects.all().count(), 1)
aliquot = Aliquot.objects.all()[0]
processing = ProcessingFactory(profile=AliquotProfile.objects.all()[0],
aliquot=aliquot)
for al in Aliquot.objects.all():
instances.append(al)
instances.append(processing)
instances.append(receive)
self.assertEqual(PackingListItem.objects.all().count(), 0)
packing_list = PackingListFactory(
list_items=aliquot.aliquot_identifier)
instances.append(packing_list)
packing_list.list_items = al.aliquot_identifier
print packing_list.list_items
packing_list.save()
#self.assertEquals(PackingListItem.objects.all().count(), 1)
#instances.append(PackingListItem.objects.all()[0])
print 'INSTANCE: ' + str(instances)
for obj in instances:
print 'test natural key on {0}'.format(obj._meta.object_name)
natural_key = obj.natural_key()
get_obj = obj.__class__.objects.get_by_natural_key(*natural_key)
self.assertEqual(obj.pk, get_obj.pk)
# pp = pprint.PrettyPrinter(indent=4)
for obj in instances:
print 'test serializing/deserializing {0}'.format(
obj._meta.object_name)
outgoing_transaction = SerializeToTransaction().serialize(
obj.__class__, obj, False, True, 'default')
for transaction in serializers.deserialize(
"json",
FieldCryptor('aes',
'local').decrypt(outgoing_transaction.tx)):
self.assertEqual(transaction.object.pk, obj.pk)
def test_household_member1(self):
# self.assertTrue(self.household_member.is_eligible)
#Create with a < 16 DOB, should make member ineligible
#enrollment_checklist.dob = datetime(2000,01,01)
#enrollment_checklist.save()
#Assert household member ineligible and put it back to its original value
#self.assertEqual(household_member.member_status, 'NOT_ELIGIBLE')
#enrollment_checklist.dob = datetime(1994,10,10)
#household_member.member_status = 'BHS'
#enrollment_checklist.save()
#Edit enrollment checklist to make them a minor without guardian available
self.enrollment_checklist.guardian = 'No'
self.enrollment_checklist.dob = datetime(1998, 01, 01).date()
#Assert household member ineligible and put back to normal
self.household_member.age_in_years = 16
self.enrollment_checklist.save()
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.dob = datetime(1994, 01, 10).date()
self.household_member.age_in_years = 20
#self.household_member.member_status = 'BHS'
self.enrollment_checklist.guardian = 'Yes'
self.enrollment_checklist.save()
#Edit enrollment checklist to say they dont have identity
self.enrollment_checklist.has_identity = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.has_identity = 'Yes'
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
#Edit enrollment checklist to say they are a non-citizen married to citizen with valid marriage certificate.
self.enrollment_checklist.citizen = 'No'
self.enrollment_checklist.legal_marriage = 'Yes'
self.enrollment_checklist.marriage_certificate = 'Yes'
self.enrollment_checklist.save()
#Assert household member is eligible
#self.assertEqual(self.household_member.member_status, 'BHS')
self.assertTrue(self.household_member.eligible_subject)
#self.assertEqual(EnrollmentLoss.objects.all().count(),1)
#EnrollmentLoss.objects.get(household_member=household_member).delete()
self.enrollment_checklist.citizen = 'Yes'
self.enrollment_checklist.legal_marriage = NOT_APPLICABLE
self.enrollment_checklist.marriage_certificate = NOT_APPLICABLE
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
#Edit enrollment checklist to say that they are part time residents
self.enrollment_checklist.part_time_resident = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.part_time_resident = 'Yes'
self.enrollment_checklist.save()
self.household_member.member_status = 'BHS'
#Edit enrollment to say that that they are an illitrate without a litirate witness available
self.enrollment_checklist.literacy = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.literacy = 'Yes'
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
#Edit enrollment checklist to say they are not a household resident
self.enrollment_checklist.household_residency = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.household_residency = 'Yes'
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
self.enrollment_checklist.dob = date(1997, 10, 10)
self.enrollment_checklist.save()
self.subject_consent = SubjectConsentFactory(
dob=self.enrollment_checklist.dob,
study_site=self.study_site,
citizen='Yes',
initials=self.enrollment_checklist.initials,
household_member=self.household_member,
registered_subject=self.household_member.registered_subject,
guardian_name="THUSO, THUSO")
print self.subject_consent.subject_identifier
print 'get registered subject'
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent.subject_identifier)
#Assert that you cannot save enrollment checklist after consent entered
#Attempt to change dob in consent thats used in enrollment checklist.
self.subject_consent.dob = datetime(1971, 01, 01).date()
#Assert consent for throwing error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.dob = self.enrollment_checklist.dob
#Attempt to change citizenship in consent thats used in enrollment checklist
self.subject_consent.citizen = 'No'
#Assert consent for throwing error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.citizen = 'Yes'
#Attempt to change Initials in consent to whats used in checklist
self.subject_consent.initials = 'OO'
#Assert consent throws error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.initials = self.enrollment_checklist.initials
# #Attempt to guardian status in consents to wats in enrollment checklist
# self.enrollment_checklist.guardian = 'Yes'
# #Assert consent throws errror
# self.assertRaises(TypeError, lambda: self.subject_consent.save())
# self.enrollment_checklist.guardian = self.enrollment_checklist.initials
#Attempt to change gender in consent to whats in enrollment checklist
self.subject_consent.gender = 'F'
#Assert consent throws error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.gender = 'M'
#Attempt to change marriage status of non citizen to whats different from checklist
self.subject_consent.legal_marriage = 'Yes'
self.subject_consent.marriage_certificate = 'Yes'
#No consent error
self.subject_consent.save()
class EnrollmentChecklistTests(TestCase):
def __init__(self, *args, **kwargs):
self.household_member = None
self.subject_consent = None
self.enrollment_checklist = None
self.registered_subject = None
self.study_site = None
super(EnrollmentChecklistTests, self).__init__(*args, **kwargs)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
plot = PlotFactory(community='test_community3',
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey1)
def test_household_member1(self):
# self.assertTrue(self.household_member.is_eligible)
#Create with a < 16 DOB, should make member ineligible
#enrollment_checklist.dob = datetime(2000,01,01)
#enrollment_checklist.save()
#Assert household member ineligible and put it back to its original value
#self.assertEqual(household_member.member_status, 'NOT_ELIGIBLE')
#enrollment_checklist.dob = datetime(1994,10,10)
#household_member.member_status = 'BHS'
#enrollment_checklist.save()
#Edit enrollment checklist to make them a minor without guardian available
self.enrollment_checklist.guardian = 'No'
self.enrollment_checklist.dob = datetime(1998, 01, 01).date()
#Assert household member ineligible and put back to normal
self.household_member.age_in_years = 16
self.enrollment_checklist.save()
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.dob = datetime(1994, 01, 10).date()
self.household_member.age_in_years = 20
#self.household_member.member_status = 'BHS'
self.enrollment_checklist.guardian = 'Yes'
self.enrollment_checklist.save()
#Edit enrollment checklist to say they dont have identity
self.enrollment_checklist.has_identity = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.has_identity = 'Yes'
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
#Edit enrollment checklist to say they are a non-citizen married to citizen with valid marriage certificate.
self.enrollment_checklist.citizen = 'No'
self.enrollment_checklist.legal_marriage = 'Yes'
self.enrollment_checklist.marriage_certificate = 'Yes'
self.enrollment_checklist.save()
#Assert household member is eligible
#self.assertEqual(self.household_member.member_status, 'BHS')
self.assertTrue(self.household_member.eligible_subject)
#self.assertEqual(EnrollmentLoss.objects.all().count(),1)
#EnrollmentLoss.objects.get(household_member=household_member).delete()
self.enrollment_checklist.citizen = 'Yes'
self.enrollment_checklist.legal_marriage = NOT_APPLICABLE
self.enrollment_checklist.marriage_certificate = NOT_APPLICABLE
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
#Edit enrollment checklist to say that they are part time residents
self.enrollment_checklist.part_time_resident = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.part_time_resident = 'Yes'
self.enrollment_checklist.save()
self.household_member.member_status = 'BHS'
#Edit enrollment to say that that they are an illitrate without a litirate witness available
self.enrollment_checklist.literacy = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.literacy = 'Yes'
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
#Edit enrollment checklist to say they are not a household resident
self.enrollment_checklist.household_residency = 'No'
self.enrollment_checklist.save()
#Assert household member ineligible
#self.assertEqual(self.household_member.member_status, 'NOT_ELIGIBLE')
self.assertFalse(self.household_member.eligible_subject)
self.assertEqual(EnrollmentLoss.objects.all().count(), 1)
EnrollmentLoss.objects.get(
household_member=self.household_member).delete()
self.enrollment_checklist.household_residency = 'Yes'
self.enrollment_checklist.save()
#self.household_member.member_status = 'BHS'
self.enrollment_checklist.dob = date(1997, 10, 10)
self.enrollment_checklist.save()
self.subject_consent = SubjectConsentFactory(
dob=self.enrollment_checklist.dob,
study_site=self.study_site,
citizen='Yes',
initials=self.enrollment_checklist.initials,
household_member=self.household_member,
registered_subject=self.household_member.registered_subject,
guardian_name="THUSO, THUSO")
print self.subject_consent.subject_identifier
print 'get registered subject'
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent.subject_identifier)
#Assert that you cannot save enrollment checklist after consent entered
#Attempt to change dob in consent thats used in enrollment checklist.
self.subject_consent.dob = datetime(1971, 01, 01).date()
#Assert consent for throwing error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.dob = self.enrollment_checklist.dob
#Attempt to change citizenship in consent thats used in enrollment checklist
self.subject_consent.citizen = 'No'
#Assert consent for throwing error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.citizen = 'Yes'
#Attempt to change Initials in consent to whats used in checklist
self.subject_consent.initials = 'OO'
#Assert consent throws error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.initials = self.enrollment_checklist.initials
# #Attempt to guardian status in consents to wats in enrollment checklist
# self.enrollment_checklist.guardian = 'Yes'
# #Assert consent throws errror
# self.assertRaises(TypeError, lambda: self.subject_consent.save())
# self.enrollment_checklist.guardian = self.enrollment_checklist.initials
#Attempt to change gender in consent to whats in enrollment checklist
self.subject_consent.gender = 'F'
#Assert consent throws error
self.assertRaises(ValidationError, lambda: self.subject_consent.save())
self.subject_consent.gender = 'M'
#Attempt to change marriage status of non citizen to whats different from checklist
self.subject_consent.legal_marriage = 'Yes'
self.subject_consent.marriage_certificate = 'Yes'
#No consent error
self.subject_consent.save()
def test_p3(self):
print 'get a community name from the mapper classes'
mapper = site_mappers.get_current_mapper()
community = mapper.map_area
print 'No. of SURVEY = ' + str(Survey.objects.all().count())
plot = PlotFactory(community=community, household_count=1, status='residential_habitable')
print 'No. of HOUSEHOLDS = ' + str(Household.objects.all().count())
Household.objects.get(plot=plot)
self.assertEquals(HouseholdStructure.objects.all().count(), 3)
self.assertEquals(Survey.objects.all().count(), 3)
household_structure = HouseholdStructure.objects.get(survey=Survey.objects.all()[0])
RepresentativeEligibilityFactory(household_structure=household_structure)
household_member = HouseholdMemberFactory(household_structure=household_structure)
enrollment_checklist = EnrollmentChecklistFactory(household_member=household_member, initials=household_member.initials, has_identity='Yes', dob=date(1989, 01, 01))
study_site = StudySite.objects.all()[0]
subject_consent = SubjectConsentFactory(study_site=study_site, household_member=household_member, registered_subject=household_member.registered_subject,
dob=enrollment_checklist.dob, initials=enrollment_checklist.initials)
print subject_consent.subject_identifier
print 'get registered subject'
registered_subject = RegisteredSubject.objects.get(subject_identifier=subject_consent.subject_identifier)
instances = []
instances.append(subject_consent)
instances.append(registered_subject)
print 'test natural key / get_by_natural_key on subject_visit'
print 'No. of ENTRIES = ' + str(Entry.objects.all().count())
# content_type = ContentType.objects.get(app_label='bcpp_subject', model='subjectvisit')
# content_type_map = ContentTypeMap.objects.get(content_type=content_type)
self.assertEqual(VisitDefinition.objects.all().count(), 2)
visit_definition = VisitDefinition.objects.get(code='T0')
print 'No. of Appointments = ' + str(Appointment.objects.all().count())
appointment = Appointment.objects.get(visit_definition=visit_definition)
# print 'No. of ScheduledEntryMetaData before Visit = '+str(ScheduledEntryMetaData.objects.all().count())
subject_visit = SubjectVisitFactory(appointment=appointment, household_member=household_member)
signals.post_save.disconnect(entry_meta_data_on_post_save, weak=False, dispatch_uid="entry_meta_data_on_post_save")
aliquot_type = AliquotType.objects.all()[0]
site = StudySite.objects.all()[0]
microtube_panel = Panel.objects.get(name='Microtube')
requisition1 = SubjectRequisitionFactory(subject_visit=subject_visit, panel=microtube_panel, aliquot_type=aliquot_type, site=site)
# print requisition1.aliquot_type.numeric_code
elisa_panel = Panel.objects.get(name='ELISA')
requisition2 = SubjectRequisitionFactory(subject_visit=subject_visit, panel=elisa_panel, aliquot_type=aliquot_type, site=site)
signals.post_save.connect(entry_meta_data_on_post_save, weak=False, dispatch_uid="entry_meta_data_on_post_save")
subject_locator = SubjectLocatorFactory(subject_visit=subject_visit, registered_subject=registered_subject)
year_1_survey = Survey.objects.get(survey_slug='bcpp-year-1')
call_list = CallListFactory(household_member=household_member, label='call_label_1')
call_log = CallLogFactory(household_member=household_member, survey=year_1_survey, label='call_label_1')
call_log2 = CallLogFactory(household_member=household_member, survey=year_1_survey, label='call_label_2')
call_log_entry = CallLogEntryFactory(call_log=call_log, survey=year_1_survey, call_datetime=datetime.now())
call_log_entry2 = CallLogEntryFactory(call_log=call_log, survey=year_1_survey, call_datetime=datetime.now() + timedelta(minutes=3))
instances.append(subject_locator)
instances.append(requisition1)
instances.append(requisition2)
instances.append(call_log)
instances.append(call_log2)
instances.append(call_log_entry)
instances.append(call_log_entry2)
instances.append(call_list)
print 'INSTANCE: ' + str(instances)
for obj in instances:
print 'test natural key on {0}'.format(obj._meta.object_name)
natural_key = obj.natural_key()
get_obj = obj.__class__.objects.get_by_natural_key(*natural_key)
self.assertEqual(obj.pk, get_obj.pk)
# pp = pprint.PrettyPrinter(indent=4)
for obj in instances:
print 'test serializing/deserializing {0}'.format(obj._meta.object_name)
outgoing_transaction = SerializeToTransaction().serialize(obj.__class__, obj, False, True, 'default')
# pp.pprint(FieldCryptor('aes', 'local').decrypt(outgoing_transaction.tx))
for transaction in serializers.deserialize("json", FieldCryptor('aes', 'local').decrypt(outgoing_transaction.tx)):
self.assertEqual(transaction.object.pk, obj.pk)
def test_p1(self):
self.assertTrue(Household.objects.all().count() == 0)
self.assertTrue(HouseholdStructure.objects.all().count() == 0)
self.assertTrue(HouseholdMember.objects.all().count() == 0)
site_lab_tracker.autodiscover()
study_specific = StudySpecificFactory()
StudySiteFactory()
content_type_map_helper = ContentTypeMapHelper()
content_type_map_helper.populate()
content_type_map_helper.sync()
ContentTypeMap.objects.get(
model__iexact=SubjectConsent._meta.object_name)
setup_dashboard(
self) # creates 3 surveys a plot and two HH which -> 6 HHS
print 'initialize the HH dashboard which will create HHS'
print 'assert no survey for today\'s date'
self.survey1.datetime_end = datetime.today() + relativedelta(days=-5)
self.survey1.save()
self.assertRaises(TypeError, HouseholdDashboard, self.dashboard_type,
self.dashboard_id, self.dashboard_model)
self.assertEquals(HouseholdStructure.objects.all().count(), 6)
print 'update survey1 to include today'
self.survey1.datetime_end = datetime.today() + relativedelta(days=+5)
self.survey1.save()
print 'try again, initialize the HH dashboard which will create HHS'
self.household_dashboard = HouseholdDashboard(self.dashboard_type,
self.dashboard_id,
self.dashboard_model)
print 'assert household structure exists for this HH and the three surveys'
self.assertEquals(
HouseholdStructure.objects.filter(
household=self.household1).count(), 3)
self.household_structure = self.household_dashboard.get_household_structure(
)
print 'create another new HH in community {0}.'.format(self.community)
self.assertEquals(
HouseholdStructure.objects.filter(
household=self.household2).count(), 3)
print 'assert no additional hh structure created'
self.assertEquals(HouseholdStructure.objects.all().count(),
6) # 2 surveys for each HH = 2 x 3 = 6
print 'create HH members for this survey and HH {0}'.format(
self.household1)
self.household_member1 = HouseholdMemberFactory(
household_structure=self.household_structure)
print 'household_member1.registered_subject.pk = {0}'.format(
self.household_member1.registered_subject.pk)
print 'household_member1.survey = {0}'.format(
self.household_member1.survey)
self.household_member2 = HouseholdMemberFactory(
household_structure=self.household_structure)
print self.household_member2.registered_subject.pk
self.household_member3 = HouseholdMemberFactory(
household_structure=self.household_structure)
print self.household_member3.registered_subject.pk
self.household_member4 = HouseholdMemberFactory(
household_structure=self.household_structure)
print self.household_member4.registered_subject.pk
# this consent has a fk to registered subject
# confirm that the signals do not create more than one registered
# subject or anything like that. consent.rs must equal household_member.rs, etc
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert one RS per HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count())
print 'assert HM1.registered_subject.subject_identifier is a pk (not consented yet)'
self.assertRegexpMatches(
HouseholdMember.objects.get(pk=self.household_member1.pk).
registered_subject.subject_identifier, self.re_pk)
print 'consent household_member1'
consent1 = SubjectConsentFactory(
household_member=self.household_member1)
self.assertEqual(Survey.objects.all().count(), 3)
print consent1.subject_identifier
print HouseholdMember.objects.get(
pk=self.household_member1.pk).registered_subject.subject_identifier
print 'assert consent1 household member is household_member1'
print self.assertEqual(consent1.household_member.pk,
self.household_member1.pk)
print 'assert still one RS per HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count())
print 'assert subject identifier on consent1 == subject identifier in registered_subject'
self.assertEqual(
consent1.subject_identifier,
RegisteredSubject.objects.get(
subject_identifier=consent1.subject_identifier).
subject_identifier)
print 'assert consent1 registered subject pk = household_member1 registered subject pk'
self.assertEqual(
consent1.registered_subject.pk,
HouseholdMember.objects.get(
pk=self.household_member1.pk).registered_subject.pk)
print 'assert consent1 registered subject subject identifier = household_member1 registered subject subject_identifier'
self.assertEqual(
consent1.registered_subject.subject_identifier,
HouseholdMember.objects.get(pk=self.household_member1.pk).
registered_subject.subject_identifier)
print 'assert cannot create a second consent for consented household_member1 {0}'.format(
self.household_member1.survey)
self.assertRaises(IdentifierError,
SubjectConsentFactory,
household_member=self.household_member1)
# repeat for year 2, make a household_structure, members and consent, etc.
# verify FK constraints do not prevent member, consent data
# verify that subsequent surveys refer to the same registered subject
# that being the one created from the first year
print 'repeat for YEAR 2 for household1'
print 'assert still have only 3 surveys'
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert have 4 HHMs for household1 (from survey1'
self.assertEqual(HouseholdMember.objects.all().count(), 4)
print 'get a household dashboard for survey2 using HH2'
self.dashboard_type = 'household'
self.dashboard_model = 'household'
self.dashboard_id = self.household1.pk
print 'instantiate hHH dashboard with household'
household_dashboard_survey2 = HouseholdDashboard(self.dashboard_type,
self.dashboard_id,
self.dashboard_model,
survey=self.survey2)
print household_dashboard_survey2
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert defaults to survey1, HHS for survey1'
self.assertEqual(household_dashboard_survey2.get_survey(),
self.survey1)
self.assertEqual(
household_dashboard_survey2.get_household_structure().survey,
self.survey1)
print 'get a household dashboard for survey2 using HH2'
self.household_structure2 = HouseholdStructure.objects.get(
household=self.household1, survey=self.survey2)
self.dashboard_type = 'household'
self.dashboard_model = 'household_structure'
self.dashboard_id = self.household_structure2.pk
household_dashboard_survey2 = HouseholdDashboard(self.dashboard_type,
self.dashboard_id,
self.dashboard_model,
survey=self.survey2)
household_dashboard_survey2
print 'confirm uses HHS2 and survey2'
self.assertEqual(household_dashboard_survey2.get_survey(),
self.survey2)
self.assertEqual(
household_dashboard_survey2.get_household_structure().survey,
self.survey2)
household_structure = household_dashboard_survey2.get_household_structure(
)
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert household dashboard returns correct household structure if given survey2'
self.assertEqual(household_structure.survey.pk, self.survey2.pk)
print 'assert household dashboard returns correct household structure if given HH1'
self.assertEqual(household_structure.household.pk, self.household1.pk)
print 'household_structure={0}, plot={1}'.format(
household_structure, household_structure.plot)
print 'assert have 4 HHMs imported from first survey after instantiating dashboard'
household_dashboard_survey2.get_context()
self.assertEqual(
HouseholdMember.objects.filter(
household_structure=household_structure).count(), 4)
print 'assert cannot create a household_member for this survey for known household members (because the dashboard created them)'
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member1.registered_subject)
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member2.registered_subject)
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member3.registered_subject)
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member4.registered_subject)
# in BCPP, subject consent has a key to registered subject as does
# household member. ensure both are pointing to the same registered_subject
# not only for this survey but always. a household_member is created anew
# for each survey but still refers to a common registered subject. the same
# for the consent, a new consent for each survey but pointing to the same
# registered_subject. household_member uses the registered_subject internal
# identifier field to figure out which registered subject to use when
# setting the attribute for subsequent surveys.
print 'get a list of household members for the survey2 household dashboard'
household_members = household_dashboard_survey2.get_household_members_as_list(
)
household_member1 = household_members[0]
print 'assert 8 household members'
self.assertEqual(HouseholdMember.objects.all().count(), 8)
print '... 4 for survey 1 and 4 for survey 2'
self.assertEqual(
HouseholdMember.objects.filter(survey=self.survey1).count(), 4)
self.assertEqual(
HouseholdMember.objects.filter(survey=self.survey2).count(), 4)
print 'assert still 4 registered subjects'
self.assertEqual(RegisteredSubject.objects.all().count(), 4)
print 'assert one RS per 2 HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count() * 2)
print 'assert HM1.registered_subject.subject_identifier is a subject identifier (was consented in previous survey)'
print HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.subject_identifier
print HouseholdMember.objects.get(
pk=household_member1.pk
).registered_subject.subject_identifier_as_pk
self.assertTrue(
HouseholdMember.objects.get(pk=household_member1.pk).
registered_subject.subject_identifier.startswith('066'))
print 'consent household_member1 (it should find the existing registered subject and subject identifier)'
consent1 = SubjectConsentFactory(household_member=household_member1)
print consent1.subject_identifier
print HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.subject_identifier
print 'assert consent1 household member is household_member1'
print self.assertEqual(consent1.household_member.pk,
household_member1.pk)
print 'assert still one RS per HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count() * 2)
print 'assert subject identifier on consent1 == subject identifier in registered_subject'
self.assertEqual(
consent1.subject_identifier,
RegisteredSubject.objects.get(
subject_identifier=consent1.subject_identifier).
subject_identifier)
print 'assert consent1 registered subject pk = household_member1 registered subject pk'
self.assertEqual(
consent1.registered_subject.pk,
HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.pk)
print 'assert consent1 registered subject subject identifier = household_member1 registered subject subject_identifier'
self.assertEqual(
consent1.registered_subject.subject_identifier,
HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.subject_identifier)
print 'assert consent1 registered subject pk = household_member1 registered subject pk for previous survey'
self.assertEqual(
consent1.registered_subject.pk,
HouseholdMember.objects.get(
pk=self.household_member1.pk).registered_subject.pk)
def create_baseline(self, household):
household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey1)
self.household_structure = household_structure
RepresentativeEligibilityFactory(
household_structure=household_structure)
# HouseholdMemberFactory(household_structure=household_structure)
# HouseholdMemberFactory(household_structure=household_structure)
# HouseholdMemberFactory(household_structure=household_structure)
HouseholdMember = get_model('bcpp_household_member', 'HouseholdMember')
self.household_member_female = HouseholdMember.objects.create(
household_structure=household_structure,
first_name='SUE',
initials='SW',
gender='F',
age_in_years=25,
study_resident='Yes',
relation='sister',
inability_to_participate=NOT_APPLICABLE)
self.household_member_male = HouseholdMember.objects.create(
household_structure=household_structure,
first_name='ERIK',
initials='EW',
gender='M',
age_in_years=25,
study_resident='Yes',
relation='brother',
inability_to_participate=NOT_APPLICABLE)
# self.household_member_female.save()
# self.household_member_male.save()
enrollment_male = EnrollmentChecklistFactory(
household_member=self.household_member_male,
initials=self.household_member_male.initials,
gender=self.household_member_male.gender,
dob=date.today() -
relativedelta(years=self.household_member_male.age_in_years),
guardian=NOT_APPLICABLE,
part_time_resident='Yes',
citizen='Yes')
self.household_member_female = HouseholdMember.objects.get(
pk=self.household_member_female.pk)
enrollment_female = EnrollmentChecklistFactory(
household_member=self.household_member_female,
initials=self.household_member_female.initials,
gender=self.household_member_female.gender,
dob=date.today() -
relativedelta(years=self.household_member_female.age_in_years),
guardian=NOT_APPLICABLE,
part_time_resident='Yes',
citizen='Yes')
self.household_member_male = HouseholdMember.objects.get(
pk=self.household_member_male.pk)
subject_consent_female = SubjectConsentFactory(
consent_datetime=datetime.today(),
household_member=self.household_member_female,
registered_subject=self.household_member_female.registered_subject,
gender='F',
dob=enrollment_female.dob,
first_name='SUE',
last_name='W',
citizen='Yes',
confirm_identity='101129811',
identity='101129811',
initials=enrollment_female.initials,
study_site=self.study_site)
subject_consent_male = SubjectConsentFactory(
consent_datetime=datetime.today(),
household_member=self.household_member_male,
registered_subject=self.household_member_male.registered_subject,
gender='M',
dob=enrollment_male.dob,
first_name=self.household_member_male.first_name,
last_name='W',
citizen='Yes',
confirm_identity='101119811',
identity='101119811',
initials=enrollment_male.initials,
study_site=self.study_site)
# FIXME: need this to be fixed, not getting gender right!
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=subject_consent_male.subject_identifier)
appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__time_point=0)
self.subject_visit_female = SubjectVisitFactory(
report_datetime=datetime.today(),
appointment=appointment_female,
household_member=self.household_member_female)
appointment_male = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__time_point=0)
self.subject_visit_male = SubjectVisitFactory(
report_datetime=datetime.today(),
appointment=appointment_male,
household_member=self.household_member_male)
def test_updates_household_structure_counts(self):
"""Assert household_member updates household structure member_count and enrolled_member_count."""
self.assertEquals(self.household_structure.member_count, 0)
self.assertEquals(self.household_structure.enrolled_member_count, 0)
household_member = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=25,
study_resident='Yes',
initials='EE')
# who is an eligible subject
EnrollmentChecklistFactory(household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
initials=household_member.initials,
part_time_resident='Yes')
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 1)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).enrolled_member_count, 0)
# who is consented
SubjectConsentFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
first_name='ERIKFIRST',
last_name='ERIKLAST',
initials=household_member.initials,
)
self.assertTrue(household_member.is_consented)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 1)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).enrolled_member_count, 1)
household_member = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=35,
study_resident='Yes',
initials='DD')
# who is an eligible subject
EnrollmentChecklistFactory(household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=35),
initials=household_member.initials,
part_time_resident='Yes')
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 2)
# who is consented
SubjectConsentFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=35),
first_name='DRIKFIRST',
last_name='DRIKLAST',
initials=household_member.initials,
)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 2)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).enrolled_member_count, 2)
