def __init__(self, infile, worksheet, encoding='xlsx'):
InstrumentResultsFileParser.__init__(self, infile, encoding.upper())
# Convert xls to csv
self._delimiter = "|"
if encoding == 'xlsx':
csv_data = xlsx_to_csv(infile,
worksheet=worksheet,
delimiter=self._delimiter)
elif encoding == 'xls':
csv_data = xls_to_csv(infile,
worksheet=worksheet,
delimiter=self._delimiter)
# adpat csv_data into a FileUpload for parse method
self._infile = infile
stub = FileStub(file=csv_data, name=str(infile.filename))
self._csvfile = FileUpload(stub)
self._encoding = encoding
self._end_header = False
def __init__(self, rsf):
InstrumentResultsFileParser.__init__(self, rsf, 'XLSX')
def __init__(self, rsf):
InstrumentResultsFileParser.__init__(self, rsf, 'CSV')
def __init__(self, txt, analysiskey, mimetype='text'):
InstrumentResultsFileParser.__init__(self, txt, mimetype)
self.analysiskey = analysiskey
self._mimetype = mimetype
def __init__(self, xml):
InstrumentResultsFileParser.__init__(self, xml, 'XML')
self._assays = {}
self._instruments = {}
def __init__(self, txt, analysiskey, mimetype='text'):
InstrumentResultsFileParser.__init__(self, txt, mimetype)
self.analysiskey = analysiskey
self._mimetype = mimetype