def exec_tout(self, brin):
adn = bio.DNA(brin)
left, center, right = adn.display_translated(return_lines=True)
# add directions
start = f'{adn.strand2.start}{_s*3}{adn.strand1.start}{_s*3}{adn.strand2.start}{_s*3}{adn.strand1.start}'
end = f'{adn.strand2.end}{_s*3}{adn.strand1.end}{_s*3}{adn.strand2.end}{_s*3}{adn.strand1.end}'
start = bio.get_c(start, "grey")
end = bio.get_c(end, "grey")
center.insert(0, start)
center.append(end)
# add padding lines to left & right
left = [''] + left + ['']
right = [''] + right + ['']
left = self._format_lines(lines=left)
center = self._format_lines(lines=center)
right = self._format_lines(lines=right)
self.text_left.setText(left)
self.text_center.setText(center)
self.text_right.setText(right)
def exec_transcription(self, brin):
brin = brin.transcribe()
lines = list(str(brin))
# add directions
start = bio.get_c(brin.start, "grey")
end = bio.get_c(brin.end, "grey")
lines = [start] + lines + [end]
lines = self._format_lines(lines=lines)
self.text_center.setText(lines)
def exec_double_brins(self, brin):
adn = bio.DNA(brin)
lines = adn.__str__(get_lines=True)
# add directions
start = f'{adn.strand1.start}{_s*3}{adn.strand2.start}'
end = f'{adn.strand1.end}{_s*3}{adn.strand2.end}'
start = bio.get_c(start, "grey")
end = bio.get_c(end, "grey")
lines.insert(0, start)
lines.append(end)
string = self._format_lines(lines=lines)
self.text_center.setText(string)
def exec_traduction(self, brin):
ribose = bio.Ribose(brin.transcribe())
# sep acid names and genome
names, arn = [], []
for line in ribose.__str__(side='left', get_lines=True):
line = line.split(' ')
names.append(' '.join(line[:-2]))
arn.append(' '.join(line[-2:]))
# add directions
start = bio.get_c(ribose.start, "grey")
end = bio.get_c(ribose.end, "grey")
arn = [start] + arn + [end]
names = [''] + names + ['']
names = self._format_lines(lines=names)
arn = self._format_lines(lines=arn)
self.text_left.setText(names)
self.text_center.setText(arn)
def display_error(self, msg):
self.reset()
self.text_left.setText(bio.get_c(msg, "red"))