def datasetsBM(host=biomart_host):
"""
Lists BioMart datasets.
:param host: address of the host server, default='http://www.ensembl.org/biomart'
:returns: nothing
"""
stdout_ = sys.stdout #Keep track of the previous value.
stream = StringIO()
sys.stdout = stream
server = BiomartServer(biomart_host)
server.show_datasets()
sys.stdout = stdout_ # restore the previous stdout.
variable = stream.getvalue()
v = variable.replace("{", " ")
v = v.replace("}", " ")
v = v.replace(": ", "\t")
print(v)
#import BiomartServer from the
#biomart module
from biomart import BiomartServer
#connect to the biomart server
server = BiomartServer("http://www.biomart.org/biomart")
#show all the server databases on the console
server.show_databases()
#show all the server datasets on the console
server.show_datasets()
#use the 'uniprot' dataset
uniprot = server.datasets['uniprot']
#run a search with custom filters and attributes
#such as searching for results with the
#protein name "Dystrophin"
#the UniProt accession number,
#the protein name and the
#gene name are give for
#each search result
response = uniprot.search({
'filters': {
from biomart import BiomartServer
server = BiomartServer(
"http://useast.ensembl.org/biomart/martview/ec08e701a2d216b5bfcc4361a79f4156?VIRTUALSCHEMANAME=default&ATTRIBUTES=ggallus_gene_ensembl.default.feature_page.ensembl_gene_id|ggallus_gene_ensembl.default.feature_page.ensembl_transcript_id&FILTERS=&VISIBLEPANEL=mainpanel"
)
print(server.show_datasets())
#import BiomartServer from the
#biomart module
from biomart import BiomartServer
#connect to the biomart server
server = BiomartServer("http://www.biomart.org/biomart")
#show all the server databases on the console
server.show_databases()
#show all the server datasets on the console
server.show_datasets()
#use the 'uniprot' dataset
uniprot = server.datasets['uniprot']
#run a search with custom filters and attributes
#such as searching for results with the
#protein name "Dystrophin"
#the UniProt accession number,
#the protein name and the
#gene name are give for
#each search result
response = uniprot.search({
'filters': {