"g":
globals(),
"sch":
partial(schedule, loop),
"top":
partial(top, process_queue, thread_queue),
"pending":
pending,
"done":
done,
}
passwords = {
'guest': '', # guest account with no password
}
from biothings.utils.hub import start_server
server = start_server(loop,
"MyVariant hub",
passwords=passwords,
port=config.SSH_HUB_PORT,
commands=COMMANDS)
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()
# indexing commands
"im" : index_manager,
"index" : index_manager.index,
"snapshot" : index_manager.snapshot,
## admin/advanced
#"loop" : loop,
#"pqueue" : process_queue,
#"tqueue" : thread_queue,
"g": globals(),
"sch" : partial(schedule,loop),
"top" : partial(top,process_queue,thread_queue),
"pending" : pending,
"done" : done,
}
passwords = {
'guest': '', # guest account with no password
}
from biothings.utils.hub import start_server
server = start_server(loop, "Species hub",passwords=passwords,port=7022,commands=COMMANDS)
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()
## admin/advanced
#"loop" : loop,
"q": jmanager.process_queue,
"t": jmanager.thread_queue,
"g": globals(),
"l": loop,
"j": jmanager,
"sch": partial(schedule, loop),
"top": jmanager.top,
"pending": pending,
"done": done,
}
passwords = config.HUB_PASSWD
from biothings.utils.hub import start_server
ssh_server = start_server(loop,
"Species hub",
passwords=passwords,
port=config.HUB_SSH_PORT,
commands=COMMANDS,
extra_ns=EXTRA_NS)
try:
loop.run_until_complete(asyncio.wait([ssh_server]))
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting SSH server: ' + str(exc))
loop.run_forever()
import biothings.hub.api.handlers.ws as ws
import sockjs.tornado
from biothings.utils.hub_db import ChangeWatcher
listener = ws.HubDBListener()
ChangeWatcher.add(listener)
ChangeWatcher.publish()
ws_router = sockjs.tornado.SockJSRouter(
partial(ws.WebSocketConnection, listener=listener), '/ws')
routes.extend(ws_router.urls)
app = tornado.web.Application(routes, settings=settings)
EXTRA_NS["app"] = app
# register app into current event loop
app_server = tornado.httpserver.HTTPServer(app)
app_server.listen(config.HUB_API_PORT)
app_server.start()
server = start_server(loop,
"MyGene hub",
passwords=config.HUB_PASSWD,
port=config.HUB_SSH_PORT,
shell=shell)
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()
# indexing commands
"im" : index_manager,
"index" : index_manager.index,
"snapshot" : index_manager.snapshot,
# admin/advanced
"loop" : loop,
"pqueue" : process_queue,
"tqueue" : thread_queue,
"g": globals(),
"sch" : partial(schedule,loop),
"top" : partial(top,process_queue,thread_queue),
"pending" : pending,
"done" : done,
}
passwords = {
'guest': '', # guest account with no password
}
from biothings.utils.hub import start_server
server = start_server(loop,"MyVariant hub",passwords=passwords,port=config.SSH_HUB_PORT,commands=COMMANDS)
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()
"dim": differ_manager,
"im": index_manager,
"jm": job_manager,
## admin/advanced
#"loop" : loop,
"q": job_manager.process_queue,
"t": job_manager.thread_queue,
"g": globals(),
"l": loop,
"j": job_manager,
"sch": partial(schedule, loop),
"top": job_manager.top,
"pending": pending,
"done": done,
}
shell.set_commands(COMMANDS, EXTRA_NS)
server = start_server(loop,
"MyChem.info hub",
passwords=config.HUB_PASSWD,
port=config.SSH_HUB_PORT,
shell=shell)
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()
"dim" : differ_manager,
"smt" : syncer_manager_test,
"smp" : syncer_manager_prod,
"im" : index_manager,
"jm" : job_manager,
"mongo_sync" : partial(syncer_manager_test.sync,"mongo"),
"es_sync_test" : partial(syncer_manager_test.sync,"es"),
"es_sync_prod" : partial(syncer_manager_prod.sync,"es"),
"loop" : loop,
"pqueue" : process_queue,
"tqueue" : thread_queue,
"g": globals(),
"sch" : partial(schedule,loop),
"top" : job_manager.top,
"pending" : pending,
"done" : done,
}
from biothings.utils.hub import start_server
server = start_server(loop,"MyGene hub",passwords=config.HUB_PASSWD,
port=config.HUB_SSH_PORT,commands=COMMANDS,extra_ns=EXTRA_NS)
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()
"um": umanager,
"upload": umanager.upload_src,
"upload_all": umanager.upload_all,
# admin/advanced
"loop": loop,
"executor": executor,
"g": globals(),
"sch": partial(schedule, loop),
}
passwords = {
'guest': '', # guest account with no password
}
from biothings.utils.hub import start_server
cwd = os.path.dirname(os.path.realpath(__file__))
server = start_server(loop,
"wikidata hub",
passwords=passwords,
port=8022,
commands=COMMANDS,
keys=[os.path.join(cwd, 'ssh_host_key')])
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()
"upload_all": umanager.upload_all,
# admin/advanced
"loop": loop,
"pqueue": process_queue,
"tqueue": thread_queue,
"g": globals(),
"sch": partial(schedule, loop),
"top": partial(top, process_queue, thread_queue),
"pending": pending,
"done": done,
}
passwords = {
'guest': '', # guest account with no password
}
from biothings.utils.hub import start_server
server = start_server(loop,
"wikidata hub",
passwords=passwords,
port=8022,
commands=COMMANDS)
try:
loop.run_until_complete(server)
except (OSError, asyncssh.Error) as exc:
sys.exit('Error starting server: ' + str(exc))
loop.run_forever()