def _draw_markers(self, plot, element, marks, axis='x'):
if marks is None:
return
style = self.style[self.cyclic_index]
mark_opts = {k[7:]: v for k, v in style.items() if axis + 'mark' in k}
mark_opts = {
'line_' + k if k in ('color', 'alpha') else k: v
for k, v in mpl_to_bokeh(mark_opts).items()
}
categories = list(
element.dimension_values(0 if axis == 'x' else 1, expanded=False))
if callable(marks):
positions = [i for i, x in enumerate(categories) if marks(x)]
elif isinstance(marks, int):
nth_mark = np.ceil(len(categories) / marks).astype(int)
positions = np.arange(len(categories) + 1)[::nth_mark]
elif isinstance(marks, tuple):
positions = [categories.index(m) for m in marks if m in categories]
else:
positions = [
m for m in marks if isinstance(m, int) and m < len(categories)
]
if axis == 'y':
positions = [len(categories) - p for p in positions]
prev_markers = self.handles.get(axis + 'marks', [])
new_markers = []
for i, p in enumerate(positions):
if i < len(prev_markers):
span = prev_markers[i]
span.update(**dict(mark_opts, location=p))
else:
dimension = 'height' if axis == 'x' else 'width'
span = Span(level='annotation',
dimension=dimension,
location=p,
**mark_opts)
plot.renderers.append(span)
span.visible = True
new_markers.append(span)
for pm in prev_markers:
if pm not in new_markers:
pm.visible = False
new_markers.append(pm)
self.handles[axis + 'marks'] = new_markers
def _draw_markers(self, plot, element, marks, axis='x'):
if marks is None:
return
style = self.style[self.cyclic_index]
mark_opts = {k[7:]: v for k, v in style.items() if axis+'mark' in k}
mark_opts = {'line_'+k if k in ('color', 'alpha') else k: v
for k, v in mpl_to_bokeh(mark_opts).items()}
categories = list(element.dimension_values(0 if axis == 'x' else 1,
expanded=False))
if callable(marks):
positions = [i for i, x in enumerate(categories) if marks(x)]
elif isinstance(marks, int):
nth_mark = np.ceil(len(categories) / marks).astype(int)
positions = np.arange(len(categories)+1)[::nth_mark]
elif isinstance(marks, tuple):
positions = [categories.index(m) for m in marks if m in categories]
else:
positions = [m for m in marks if isinstance(m, int) and m < len(categories)]
if axis == 'y':
positions = [len(categories)-p for p in positions]
prev_markers = self.handles.get(axis+'marks', [])
new_markers = []
for i, p in enumerate(positions):
if i < len(prev_markers):
span = prev_markers[i]
span.update(**dict(mark_opts, location=p))
else:
dimension = 'height' if axis == 'x' else 'width'
span = Span(level='annotation', dimension=dimension,
location=p, **mark_opts)
plot.renderers.append(span)
span.visible = True
new_markers.append(span)
for pm in prev_markers:
if pm not in new_markers:
pm.visible = False
new_markers.append(pm)
self.handles[axis+'marks'] = new_markers
def draw_figure(self, **kwargs):
y_axis_type = kwargs.pop('y_axis_type', 'log')
x_axis_type = kwargs.pop('x_axis_type', 'linear')
fig = figure(y_axis_type=y_axis_type,
x_axis_type=x_axis_type,
tools='pan,wheel_zoom,box_zoom,save,reset',
**kwargs)
fig.min_border_left = MIN_BORDER_LEFT
fig.xaxis.axis_label = 'Residue number'
fig.yaxis.axis_label = self.y_label
# todo refactor controller access to imporove upon current try/except and allow more controller agnostic behaviour
try:
for _ in range(self.control_panels['ClassificationControl'].
param['num_colors'].bounds[1] - 1):
sp = Span(location=0, dimension='width')
sp.tags = ['thd']
sp.visible = False
fig.add_layout(sp)
except KeyError:
pass
return fig