def setup(params, *args, **kw): python_setup("RootTipMulti.py", params) matlab_setup('matlab/maizeG.m', bisque_deps=False, params=params) docker_setup('roottipmulti', 'RootTipMulti', 'matlab_runtime', params=params)
def setup(params, *args, **kw): docker_params = read_config('runtime-bisque.cfg', "docker") if not asbool(docker_params.get('docker.enabled', False)): print "No Docker available... cannot set up module." return 1 try: # clone Dream.3D UCSB repo and build Docker image tmp_dir = tempfile.mkdtemp() print "Cloning code into %s..." % tmp_dir p = Popen([ 'git', 'clone', '[email protected]:wlenthe/UCSB_DREAM3D', '%s/source' % tmp_dir ], stdout=PIPE) if p.wait() != 0: print "Dream.3D repo could not be cloned... cannot set up module." return 1 # build Docker image print "Building Dream.3D docker image..." p = Popen([ 'timeout', '-s', 'SIGKILL', '120m', 'docker', 'build', '--tag', 'dream3d_ucsb', '%s/source' % tmp_dir ], stdout=PIPE) while True: line = p.stdout.readline() if line == '': break m = re.search('\[[ ]*[0-9]+%\]', line) if m: print '\r\r\r\r\r\r', print m.group(0), sys.stdout.flush() print if p.wait() != 0: print "Dream.3D image could not be built... cannot set up module." return 1 python_setup('Dream3D.py', params=params) docker_setup('bisque_dream3d_ucsb', 'Dream3D', 'dream3d_ucsb', params=params) finally: # delete tmp_dir shutil.rmtree(tmp_dir)
def setup(params, *args, **kw): python_setup('ImageJ.py', params=params) docker_setup('bisque_imagej', 'ImageJ', 'imagej', params=params)
def setup(params, *args, **kw): python_setup('MetaData.py', params=params)
def setup(params, *args, **kw): python_setup('PythonScriptWrapper.py', params=params) docker_setup('COVIDPredictor', params=params)
def setup(params, *args, **kw): python_setup('PythonScriptWrapper.py', params=params) docker_setup('torch-cellseg-3dunet-v3', 'CellSegment3DUnet', 'torch-cellseg-3dunet-v2', params=params)
def setup(params, *args, **kw): python_setup('Connoisseur.py', params=params)
def setup(params, *args, **kw): python_setup('JavaAppletEx.py', params=params)
def setup(params, *args, **kw): python_setup('AnnotationHistograms.py', params=params)
def setup(params, *args, **kw): python_setup('SeedSize.py', params=params) matlab_setup('matlab/seedSize', bisque_deps=False, params=params) docker_setup('seedsize', 'SeedSize', 'matlab_runtime', params=params)
def setup(params, *args, **kw): python_setup('Dream3D.py', params=params) docker_setup('bisque_dream3d', 'Dream3D', 'dream3d', params=params)
def setup(params, *args, **kw): python_setup('WorkflowRunner.py', params=params)
def setup(params, *args, **kw): python_setup('PythonScriptWrapper.py', params=params) docker_setup('segmentation', 'TwoPhasePrediction', 'twophaseprediction', params=params)
def setup(params, *args, **kw): python_setup("RootNavLinuxModule.py", params)
def setup(params, *args, **kw): python_setup('MotionMeerkat.py', params=params)
def setup(params, *args, **kw): python_setup('AnnotationPhysicalDimensions.py', params=params )
def setup(*args, **kw): python_setup('RootTip.py', params=params) matlab_setup('matlab/araGT.m', bisque_deps=False, params=params) docker_setup('roottip', "RootTip", "matlab_runtime", params=params)
def setup(params, *args, **kw): python_setup('MotionMeerkat/main.py', params=params )
def setup(params, *args, **kw): return python_setup('BotanicamTrainer.py', params=params)
def setup(params, *args, **kw): return python_setup('SkeletonPython.py', params=params)
def setup(params, *args, **kw): return python_setup('PlanteomeDeepSegment.py', params=params)
def setup(params, *args, **kw): python_setup('AnnotationFromSpreadsheet.py', params=params)
def setup(params, *args, **kw): python_setup('AnnotationExportGeo.py', params=params)
def setup(params, *args, **kw): python_setup('PythonScriptWrapper.py', params=params) docker_setup('cell_segmentation_2d', 'CellSegmentation2D', 'cell-segmentation-2d', params=params)
def setup(params, *args, **kw): python_setup('AnnotationAdd.py', params=params)
def setup(params, *args, **kw): python_setup('PythonScriptWrapper.py', params=params) docker_setup('Composite_Strength', 'TwoPhasePrediction', 'twophaseprediction', params=params)
def setup(params, *args, **kw): python_setup('PythonScriptWrapper.py', params=params)