def draw_net(self, prefix, net,
graph_type=GraphType.GENE_SIGNAL,
knockouts=True,
target=None,
with_dot=False):
ana = NetworkAnalysis(net)
ana.annotate(target)
g = get_graph_by_type(graph_type, ana, knockouts=knockouts)
d = DotMaker(g)
p = self.analysis_path / '{}-G{:07d}-N{:02d}-F{}.png'.format(
prefix, net.generation, net.identifier, net.fitness)
log.info("Writing {}".format(str(p)))
d.save_picture(str(p))
if with_dot:
d.save_dot(str(p.with_suffix('.dot')))
def test_graph_creation(tmpdir, bowtie_network):
output_path = pathlib.Path(str(tmpdir))
ana = NetworkAnalysis(bowtie_network)
g = graph_maker.SignalFlowGraph(ana)
d = DotMaker(g)
d.save_picture(str(output_path / 'signal.png'))
# g = graph.GeneSignalGraph(ana)
g = graph_maker.GeneGraph(ana)
d = DotMaker(g)
d.save_picture(str(output_path / 'gene.png'))
g = graph_maker.FullGraph(ana)
d = DotMaker(g)
d.save_picture(str(output_path / 'full.png'))
