def test_parse_scans(self):
root_path = os.path.join("path", "to")
expected_contents = {"acqp": None, "method": None, "recons": None}
with mock.patch.object(
BrukerMetadata, "read_scans",
return_value=expected_contents) as mock_read_scans:
m = BrukerMetadata(root_path)
m.parse_scans()
assert m.scan_data == expected_contents
mock_read_scans.assert_called_once()
def list_scans(pfo_study):
study = BrukerMetadata(pfo_study)
study.parse_subject()
study.parse_scans()
# Print study details to the console
print()
print("Subject: {}".format(study.subject_data["SUBJECT_name_string"]))
print("Study Date: {:%Y-%m-%d %H:%M}".format(
datetime.strptime(study.subject_data["SUBJECT_date"],
"%Y-%m-%dT%H:%M:%S,%f%z")))
print("-------------------------------------------------------- ")
print()
for scan, value in study.scan_data.items():
print("Scan {}".format(scan))
print("Protocol: {}".format(value["acqp"]["ACQ_protocol_name"]).ljust(
30) + "Method: {}".format(value["acqp"]["ACQ_method"]).ljust(30) +
"Scan Time: {}".format(
timedelta(
seconds=int(round(value["method"]["ScanTime"] /
1000)))).ljust(30))
print()