def process(self, args):
adjusted_args = []
for arg in args:
if (arg == "--Verbose"): arg = "--verbose=1"
adjusted_args.append(arg)
command_line = libtbx.option_parser.option_parser.process(
self, adjusted_args)
opts = command_line.options
if opts.n_scatterers is not None:
opts.n_scatterers = [int(x) for x in opts.n_scatterers.split(',')]
sg_set_flags = [
opts.space_group_set == x for x in self.space_group_sets
]
if sg_set_flags.count(True) == 0 and command_line.args:
sg_symbols = command_line.args
else:
sg_symbols = debug_utils.get_test_space_group_symbols(
*sg_set_flags)
command_line.space_group_info_list = [
sgtbx.space_group_info(symbol) for symbol in sg_symbols
]
del command_line.options.space_group_set
# convert to list since attributes are deleted in the loop
for attr in list(command_line.options.__dict__.keys()):
if getattr(command_line.options, attr) in ('', None):
delattr(command_line.options, attr)
command_line.args = ()
return command_line
def process(self, args):
adjusted_args = []
for arg in args:
if (arg == "--Verbose"): arg = "--verbose=1"
adjusted_args.append(arg)
command_line = libtbx.option_parser.option_parser.process(
self, adjusted_args)
opts = command_line.options
if opts.n_scatterers is not None:
opts.n_scatterers = [ int(x) for x in opts.n_scatterers.split(',') ]
sg_set_flags = [ opts.space_group_set == x
for x in self.space_group_sets ]
if sg_set_flags.count(True) == 0 and command_line.args:
sg_symbols = command_line.args
else:
sg_symbols = debug_utils.get_test_space_group_symbols(*sg_set_flags)
command_line.space_group_info_list = [
sgtbx.space_group_info(symbol) for symbol in sg_symbols ]
del command_line.options.space_group_set
for attr in command_line.options.__dict__.keys():
if getattr(command_line.options, attr) in ('', None):
delattr(command_line.options, attr)
command_line.args = ()
return command_line
def run_all():
sglist = debug_utils.get_test_space_group_symbols( False, False, True, False)
for sg in sglist:
run_single(sg)
