def smart_problems(toc):
g=rdflib.Graph()
cdautil.rdfinit(g)
# Create a namespace object
dcterms=Namespace("http://purl.org/dc/terms/")
rdf=Namespace("http://www.w3.org/1999/02/22-rdf-syntax-ns#")
sp=Namespace("http://smartplatforms.org/terms#")
smart=Namespace("http://sandbox-api.smartplatforms.org/records/")
snomed=Namespace("http://purl.bioontology.org/ontology/SNOMEDCT/")
ccd=Namespace("http://this.ccd.com/")
j=toc['problem-count']
for i in range(1,j+1):
pdata='problem-'+str(i)+'-data'
p=toc[pdata]
sub=ccd[pdata]
g.add((sub,RDF.type,sp['Problem']))
bto=ccd['problems']
g.add((sub,sp['belongsTo'],bto))
g.add((sub,sp['startDate'],Literal(p['effectiveTime'])))
probname=BNode()
g.add((sub,sp['problemName'],probname))
g.add((probname,RDF.type,sp['CodedValue']))
g.add((probname,dcterms['title'],Literal(p['displayName'])))
g.add((probname,sp['code'],snomed[p['code']]))
return g
def smart_medications(toc):
g=rdflib.Graph()
cdautil.rdfinit(g)
# Create a namespace object
dcterms=Namespace("http://purl.org/dc/terms/")
rdf=Namespace("http://www.w3.org/1999/02/22-rdf-syntax-ns#")
sp=Namespace("http://smartplatforms.org/terms#")
smart=Namespace("http://sandbox-api.smartplatforms.org/records/")
snomed=Namespace("http://purl.bioontology.org/ontology/SNOMEDCT/")
rxnorm=Namespace("http://purl.bioontology.org/ontology/RXNORM/")
ccd=Namespace("http://this.ccd.com/")
j=toc['medication-count']
for i in range(1,j+1):
meddata='medication-'+str(i)+'-data'
med=toc[meddata]
sub=ccd[meddata]
g.add((sub,RDF.type,sp['Medication']))
bto=ccd['medications']
g.add((sub,sp['belongsTo'],bto))
g.add((sub,sp['startDate'],Literal(med['effectiveTime'])))
medname=BNode()
g.add((sub,sp['medicationName'],medname))
g.add((medname,RDF.type,sp['CodedValue']))
g.add((medname,dcterms['title'],Literal(med['displayName'])))
g.add((medname,sp['code'],rxnorm[med['code']]))
route=med['route']
binstr=BNode()
broute=BNode()
g.add((medname,sp['instructions'],binstr))
g.add((binstr,sp['route'],broute))
g.add((broute,RDF.type,sp['CodedValue']))
g.add((broute,sp['codeSystemName'],Literal(route['codeSystemName'])))
g.add((broute,sp['code'],Literal(route['code'])))
g.add((broute,dcterms['title'],Literal(route['displayName'])))
# g.add((broute,sp['originalText'],Literal(route['originalText'])))
# try rtrans=route['translation']
# brtrans=BNode()
# g.add((broute,sp['translation'],brtrans))
# g.add((brtrans,RDF.type,sp['CodedValue']))
# g.add((brtrans,sp['codeSystemName'],Literal(rtrans['codeSystemName'])))
# g.add((brtrans,sp['code'],Literal(rtrans['code'])))
# g.add((brtrans,dcterms['title'],Literal(rtrans['displayName'])))
period=med['period']
bperiod=BNode()
dose=med['dose']
bdose=BNode()
g.add((medname,sp['quantity'],bdose))
g.add((bdose,sp['unit'],Literal(dose['unit'])))
g.add((bdose,sp['value'],Literal(dose['value'])))
freq=med['period']
bfreq=BNode()
g.add((medname,sp['frequency'],bfreq))
# g.add((bfreq,RDF.type,sp['CodedValue']))
g.add((bfreq,sp['unit'],Literal(freq['unit'])))
g.add((bfreq,sp['value'],Literal(freq['value'])))
return g