def setUp(self):
self.model_container = moose.Neutral('/model')
self.data_container = moose.Neutral('/data')
self.m1 = moose.Neutral('%s/hsolve_tcr' % (self.model_container.path))
self.d1 = moose.Neutral('%s/hsolve_tcr' % (self.data_container.path))
self.m2 = moose.Neutral('%s/ee_tcr' % (self.model_container.path))
self.d2 = moose.Neutral('%s/ee_tcr' % (self.data_container.path))
self.p1 = setup_current_step_model(self.m1, self.d1, 'TCR', pulsearray, simdt, plotdt)
self.p2 = setup_current_step_model(self.m2, self.d2, 'TCR', pulsearray, simdt, plotdt)
for ii in moose.wildcardFind('%s/##[ISA=ChanBase]' % (self.model_container.path)):
moose.delete(ii)
for ii in moose.wildcardFind('%s/##[ISA=CaConc]' % (self.model_container.path)):
moose.delete(ii)
for ii in moose.wildcardFind('%s/##[ISA=Compartment]' % (self.model_container.path)):
moose.element(ii).Ra = 1e6
self.hsolve = moose.HSolve('%s/solve' % (self.p1['cell'].path))
self.hsolve.dt = simdt
self.hsolve.target = self.p1['cell'].path
def createCell(self, name):
model_container = moose.Neutral('/model')
data_container = moose.Neutral('/data')
# moose.le(model_container)
# moose.le(data_container)
for ch in model_container.children:
moose.delete(ch)
for ch in data_container.children:
moose.delete(ch)
params = setup_current_step_model(model_container, data_container,
name, [[0, 0, 0], [1e9, 0, 0]])
# moose.le(model_container)
# moose.le(data_container)
params['modelRoot'] = model_container.path
params['dataRoot'] = data_container.path
return params
def createCell(self, name):
model_container = moose.Neutral('/model')
data_container = moose.Neutral('/data')
# moose.le(model_container)
# moose.le(data_container)
for ch in model_container.children:
moose.delete(ch)
for ch in data_container.children:
moose.delete(ch)
params = setup_current_step_model(model_container, data_container,
name, [[0, 0, 0], [1e9, 0, 0]])
# moose.le(model_container)
# moose.le(data_container)
print '11111'
print model_container.path, data_container.path
params['modelRoot'] = model_container.path
params['dataRoot'] = data_container.path
print 'here'
return params
