def __get_module_files(self):
self.__module_files = [
'File Processing', 'Image Processing', 'Object Processing',
'Measurement', 'Data Tools', 'Other', 'All'
]
self.__module_dict = {}
for key in self.__module_files:
self.__module_dict[key] = {}
for mn in cellprofiler.modules.get_module_names():
def loader(module_num, mn=mn):
module = cellprofiler.modules.instantiate_module(mn)
module.set_module_num(module_num)
return module
try:
module = cellprofiler.modules.get_module_class(mn)
if module.is_input_module():
continue
categories = ([module.category] if isinstance(
module.category, str) else list(
module.category)) + ['All']
for category in categories:
if category not in self.__module_files:
self.__module_files.insert(-2, category)
self.__module_dict[category] = {}
self.__module_dict[category][module.module_name] = loader
except Exception, e:
import traceback
import logging
logging.root.error("Unable to instantiate module %s.\n\n",
mn,
exc_info=True)
def split_pipeline(self, pipeline):
"""Split the pipeline into input modules and everything else
pipeline - the pipeline to be split
returns a two-tuple of input modules and other
"""
input_modules = []
other_modules = []
for module in pipeline.modules():
if module.is_load_module() or module.is_input_module():
input_modules.append(module)
else:
other_modules.append(module)
return input_modules, other_modules
def __get_module_files(self):
self.__module_files = ['File Processing',
'Image Processing',
'Object Processing',
'Measurement',
'Data Tools',
'Other',
'All'
]
self.__module_dict = {}
for key in self.__module_files:
self.__module_dict[key] = {}
for mn in cellprofiler.modules.get_module_names():
def loader(module_num, mn=mn):
module = cellprofiler.modules.instantiate_module(mn)
module.set_module_num(module_num)
return module
try:
module = cellprofiler.modules.get_module_class(mn)
if module.is_input_module():
continue
categories = ([module.category]
if isinstance(module.category, str)
else list(module.category)) + ['All']
for category in categories:
if category not in self.__module_files:
self.__module_files.insert(-2, category)
self.__module_dict[category] = {}
self.__module_dict[category][module.module_name] = loader
except Exception, e:
import traceback
import logging
logging.root.error(
"Unable to instantiate module %s.\n\n", mn, exc_info=True)