def split_pipeline(self, pipeline):
"""Split the pipeline into input modules and everything else
pipeline - the pipeline to be split
returns a two-tuple of input modules and other
"""
input_modules = []
other_modules = []
for module in pipeline.modules():
if module.is_load_module() or module.is_input_module():
input_modules.append(module)
else:
other_modules.append(module)
return input_modules, other_modules
def __get_module_files(self):
self.__module_files = [
"File Processing",
"Image Processing",
"Object Processing",
"Measurement",
"Data Tools",
"Other",
"All",
]
self.__module_dict = {}
for key in self.__module_files:
self.__module_dict[key] = {}
for mn in cellprofiler_core.modules.get_module_names():
def loader(module_num, mn=mn):
module = cellprofiler_core.modules.instantiate_module(mn)
module.set_module_num(module_num)
return module
try:
module = cellprofiler_core.modules.get_module_class(mn)
if module.is_input_module():
continue
categories = (
[module.category]
if isinstance(module.category, str)
else list(module.category)
) + ["All"]
for category in categories:
if category not in self.__module_files:
self.__module_files.insert(-2, category)
self.__module_dict[category] = {}
self.__module_dict[category][module.module_name] = loader
except Exception as e:
import traceback
import logging
logging.root.error(
"Unable to instantiate module %s.\n\n", mn, exc_info=True
)