def test_get_versions_one_bundle(housekeeper_api: HousekeeperAPI,
spring_bundle: dict):
"""Test to get latest versions of bundles when no bundles exists"""
# GIVEN a populated housekeeper_api
housekeeper_api.add_bundle(spring_bundle)
# WHEN fetching versions
versions = helpers.get_versions(housekeeper_api)
# THEN assert no versions was returned
assert sum(1 for version in versions) == 1
def test_correct_spring_paths(
housekeeper_api: HousekeeperAPI,
spring_bundle_symlink_problem: dict,
symlinked_fastqs: dict,
new_dir: Path,
):
"""docstring for test_correct_spring_paths"""
# GIVEN a populated housekeeper_api
housekeeper_api.add_bundle(spring_bundle_symlink_problem)
# GIVEN that the spring files exists in the wrong location
versions = helpers.get_versions(housekeeper_api)
version = next(versions)
for file_path in version.files:
assert not Path(file_path.full_path).exists()
# WHEN updating the spring paths
helpers.correct_spring_paths(housekeeper_api)
# THEN assert that the spring paths has been moved
for file_path in version.files:
assert Path(file_path.full_path).exists()
def ensure_hk_bundle(
store: HousekeeperAPI, bundle_data: dict, include: bool = False
) -> hk_models.Bundle:
"""Utility function to add a bundle of information to a housekeeper api"""
bundle_exists = False
for bundle in store.bundles():
if bundle.name != bundle_data["name"]:
continue
bundle_exists = True
_bundle = bundle
break
if not bundle_exists:
_bundle, _version = store.add_bundle(bundle_data)
store.add_commit(_bundle, _version)
if include:
store.include(_version)
return _bundle
