def __init__(self,
session,
enclose_atoms,
show_atoms,
probe_radius,
grid_spacing,
resolution,
level,
name,
color,
visible_patches,
sharp_boundaries,
update=True):
Surface.__init__(self, name, session)
self.selection_coupled = enclose_atoms.unique_structures
self.atoms = enclose_atoms
self._atom_count = len(
self.atoms) # Used to determine when atoms deleted.
self.show_atoms = show_atoms # Atoms for surface patch to show
self.probe_radius = probe_radius # Only used for solvent excluded surface
self.grid_spacing = grid_spacing
self.resolution = resolution # Only used for Gaussian surface
self.level = level # Contour level for Gaussian surface, atomic number units
self.color = color
self._atom_patch_colors = None
self._atom_patch_color_mask = None
self.visible_patches = visible_patches
self.sharp_boundaries = sharp_boundaries
self._joined_triangles = None
self._refinement_steps = 1 # Used for fixing sharp edge problems near 3 atom junctions.
self._auto_update_handler = None
self.auto_update = update
self._vertex_to_atom = None
self._vertex_to_atom_count = None # Used to check if atoms deleted
self._max_radius = None
self.clip_cap = True
def __init__(self, session):
Surface.__init__(self, 'blob outline box', session)
self.pickable = False