def test_mutually_exclusive_groups(self):
script_path = os.path.join(self.script_dir, 'mutually_exclusive.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{
'model': 'BooleanField', 'type': 'checkbox', 'mutex_group': {'id': 0, 'title': None},
'name': 'foo', 'required': False, 'help': None, 'param': '--foo', 'param_action': set(),
'choices': None, 'choice_limit': 0, 'checked': False,
},
{
'model': 'BooleanField', 'type': 'checkbox', 'mutex_group': {'id': 0, 'title': None},
'name': 'bar', 'required': False, 'help': None, 'param': '--bar', 'param_action': set(),
'choices': None, 'choice_limit': 0, 'checked': True,
},
{
'model': 'BooleanField', 'type': 'checkbox', 'mutex_group': {'id': 1, 'title': None},
'name': 'foo2', 'required': False, 'help': None, 'param': '--foo2', 'param_action': set(),
'choices': None, 'choice_limit': 0, 'checked': False,
},
{
'model': 'BooleanField', 'type': 'checkbox', 'mutex_group': {'id': 1, 'title': None},
'name': 'bar2', 'required': False, 'help': None, 'param': '--bar2', 'param_action': set(),
'choices': None, 'choice_limit': 0, 'checked': True,
},
],
'group': 'optional arguments',
},
)
def test_argparse_specify_every_param(self):
script_path = os.path.join(self.script_dir, 'choices.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
append_field = [i for i in script_params['inputs'][''][1]['nodes'] if i['param'] == '--need-at-least-one-numbers'][0]
self.assertIn(SPECIFY_EVERY_PARAM, append_field['param_action'])
def test_argparse_specify_every_param(self):
script_path = os.path.join(self.script_dir, 'choices.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
append_field = [i for i in script_params['inputs'][''][1]['nodes'] if i['param'] == '--need-at-least-one-numbers'][0]
self.assertIn(SPECIFY_EVERY_PARAM, append_field['param_action'])
def add_wooey_script(script=None, group=None):
from ..models import Script, ScriptGroup, ScriptParameter, ScriptParameterGroup
# if we have a script, it will at this point be saved in the model pointing to our file system, which may be
# ephemeral. So the path attribute may not be implemented
if not isinstance(script, six.string_types):
try:
script_path = script.script_path.path
except NotImplementedError:
script_path = script.script_path.name
script_obj, script = (script, get_storage_object(script_path, local=True).path) if isinstance(script, Script) else (False, script)
if isinstance(group, ScriptGroup):
group = group.group_name
if group is None:
group = 'Wooey Scripts'
basename, extension = os.path.splitext(script)
filename = os.path.split(basename)[1]
parser = Parser(script_name=filename, script_path=script)
if not parser.valid:
return (False, parser.error)
# make our script
d = parser.get_script_description()
script_group, created = ScriptGroup.objects.get_or_create(group_name=group)
if script_obj is False:
wooey_script, created = Script.objects.get_or_create(script_group=script_group, script_description=d['description'],
script_path=script, script_name=d['name'])
else:
created = False
if not script_obj.script_description:
script_obj.script_description = d['description']
if not script_obj.script_name:
script_obj.script_name = d['name']
# probably a much better way to avoid this recursion
script_obj._add_script = False
script_obj.save()
if not created:
if script_obj is False:
wooey_script.script_version += 1
wooey_script.save()
if script_obj:
wooey_script = script_obj
# make our parameters
for param_group_info in d['inputs']:
param_group, created = ScriptParameterGroup.objects.get_or_create(group_name=param_group_info.get('group'), script=wooey_script)
for param in param_group_info.get('nodes'):
# TODO: fix 'file' to be global in argparse
is_out = True if param.get('upload', None) is False and param.get('type') == 'file' else not param.get('upload', False)
script_param, created = ScriptParameter.objects.get_or_create(script=wooey_script, short_param=param['param'], script_param=param['name'],
is_output=is_out, required=param.get('required', False),
form_field=param['model'], default=param.get('default'), input_type=param.get('type'),
choices=json.dumps(param.get('choices')), choice_limit=json.dumps(param.get('choice_limit', 1)),
param_help=param.get('help'), is_checked=param.get('checked', False),
parameter_group=param_group)
# update our loaded scripts
load_scripts()
return (True, '')
def test_subparser(self):
script_path = os.path.join(self.script_dir, 'subparser_script.py')
parser = Parser(script_path=script_path)
description = parser.get_script_description()
main_parser = description['inputs']['']
main_parser_group1 = main_parser[0]
self.assertEqual(main_parser_group1['nodes'][0]['name'], 'test_arg')
self.assertEqual(main_parser_group1['group'], 'optional arguments')
subparser1 = description['inputs']['subparser1']
subparser_group1 = subparser1[0]
self.assertEqual(subparser_group1['nodes'][0]['name'], 'sp1')
def test_subparser(self):
script_path = os.path.join(self.script_dir, 'subparser_script.py')
parser = Parser(script_path=script_path)
description = parser.get_script_description()
main_parser = description['inputs']['']
main_parser_group1 = main_parser[0]
self.assertEqual(main_parser_group1['nodes'][0]['name'], 'test_arg')
self.assertEqual(main_parser_group1['group'], 'optional arguments')
subparser1 = description['inputs']['subparser1']
subparser_group1 = subparser1[0]
self.assertEqual(subparser_group1['nodes'][0]['name'], 'sp1')
def test_zipapp(self):
script_path = os.path.join(self.script_dir, 'data_reader.zip')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{'param_action': set([]), 'name': 'n', 'required': False, 'param': '-n', 'choices': None, 'value': -1,
'choice_limit': None, 'model': 'IntegerField', 'type': 'text', 'help': 'The number of rows to read.'}],
'group': 'optional arguments',
}
)
def test_zipapp(self):
script_path = os.path.join(self.script_dir, 'data_reader.zip')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{'param_action': set([]), 'name': 'n', 'required': False, 'param': '-n', 'choices': None, 'value': -1,
'choice_limit': None, 'model': 'IntegerField', 'type': 'text', 'help': 'The number of rows to read.', 'mutex_group': {},}],
'group': 'optional arguments',
}
)
def test_error_script(self):
script_path = os.path.join(self.script_dir, 'error_script.py')
parser = Parser(script_path=script_path)
if PY_MINOR_VERSION >= PY36:
self.assertIn('ModuleNotFoundError', parser.error)
else:
self.assertIn('ImportError', parser.error)
self.assertIn('something_i_dont_have', parser.error)
script_path = os.path.join(self.script_dir, 'choices.py')
parser = Parser(script_path=script_path)
self.assertEquals('', parser.error)
def test_function_type_script(self):
script_path = os.path.join(self.script_dir, 'function_argtype.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{
'param_action': set([]),
'name': 'start_date',
'required': True,
'param': '',
'choices': None,
'choice_limit': None,
'model': 'CharField',
'type': 'text',
'help': 'Use date in format YYYYMMDD (e.g. 20180131)',
# The default argument
'value': '20180131',
'mutex_group': {},
},
{
'param_action': set([]),
'name': 'lowercase',
'required': True,
'param': '',
'choices': None,
'value': 'ABC',
'choice_limit': None,
'model': 'CharField',
'type': 'text',
'help': 'Lowercase it',
'mutex_group': {},
}
],
'group': 'positional arguments'
}
)
def test_function_type_script(self):
script_path = os.path.join(self.script_dir, 'function_argtype.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{
'param_action': set([]),
'name': 'start_date',
'required': True,
'param': '',
'choices': None,
'choice_limit': None,
'model': 'CharField',
'type': 'text',
'help': 'Use date in format YYYYMMDD (e.g. 20180131)',
# The default argument
'value': '20180131'
},
{
'param_action': set([]),
'name': 'lowercase',
'required': True,
'param': '',
'choices': None,
'value': 'ABC',
'choice_limit': None,
'model': 'CharField',
'type': 'text',
'help': 'Lowercase it'
}
],
'group': 'positional arguments'
}
)
def test_naval_fate(self):
script_path = os.path.join(self.script_dir, 'naval_fate.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
self.assertEqual(script_params['name'], 'naval_fate')
# Make sure we return parameters in the order the script defined them and in groups
# We do not test this that exhaustively atm since the structure is likely to change when subparsers
# are added
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{'model': 'CharField', 'type': 'text', 'name': 'speed', 'param': '--speed'},
{'model': 'BooleanField', 'type': 'checkbox', 'name': 'moored', 'param': '--moored'},
{'model': 'BooleanField', 'type': 'checkbox', 'name': 'drifting', 'param': '--drifting'}
],
'group': 'default'
}
)
def test_naval_fate(self):
script_path = os.path.join(self.script_dir, 'naval_fate.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
self.assertEqual(script_params['name'], 'naval_fate')
# Make sure we return parameters in the order the script defined them and in groups
# We do not test this that exhaustively atm since the structure is likely to change when subparsers
# are added
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{'model': 'CharField', 'type': 'text', 'name': 'speed', 'param': '--speed'},
{'model': 'BooleanField', 'type': 'checkbox', 'name': 'moored', 'param': '--moored'},
{'model': 'BooleanField', 'type': 'checkbox', 'name': 'drifting', 'param': '--drifting'}
],
'group': 'default'
}
)
def test_argparse_script(self):
script_path = os.path.join(self.script_dir, 'choices.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
# Make sure we return parameters in the order the script defined them and in groups
# We do not test this that exhaustively atm since the structure is likely to change when subparsers
# are added
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{'param_action': set([]), 'name': 'first_pos', 'required': True, 'param': '', 'choices': None,
'choice_limit': None, 'model': 'CharField', 'type': 'text', 'help': None, 'mutex_group': {},},
{'param_action': set([]), 'name': 'second-pos', 'required': True, 'param': '', 'choices': None,
'choice_limit': None, 'model': 'CharField', 'type': 'text', 'help': None, 'mutex_group': {},}
],
'group': 'positional arguments'
}
)
def test_argparse_script(self):
script_path = os.path.join(self.script_dir, 'choices.py')
parser = Parser(script_path=script_path)
script_params = parser.get_script_description()
self.assertEqual(script_params['path'], script_path)
# Make sure we return parameters in the order the script defined them and in groups
# We do not test this that exhaustively atm since the structure is likely to change when subparsers
# are added
self.assertDictEqual(
script_params['inputs'][''][0],
{
'nodes': [
{'param_action': set([]), 'name': 'first_pos', 'required': True, 'param': '', 'choices': None,
'choice_limit': None, 'model': 'CharField', 'type': 'text', 'help': None},
{'param_action': set([]), 'name': 'second-pos', 'required': True, 'param': '', 'choices': None,
'choice_limit': None, 'model': 'CharField', 'type': 'text', 'help': None}
],
'group': 'positional arguments'
}
)
def add_wooey_script(script_version=None,
script_path=None,
group=None,
script_name=None):
# There is a class called 'Script' which contains the general information about a script. However, that is not where the file details
# of the script lie. That is the ScriptVersion model. This allows the end user to tag a script as a favorite/etc. and set
# information such as script descriptions/names that do not constantly need to be updated with every version change. Thus,
# a ScriptVersion stores the file info and such.
from ..models import Script, ScriptGroup, ScriptParser, ScriptParameter, ScriptParameterGroup, ScriptVersion
# if we are adding through the admin, at this point the file will be saved already and this method will be receiving
# the scriptversion object. Otherwise, we are adding through the managementment command. In this case, the file will be
# a location and we need to setup the Script and ScriptVersion in here.
# check if the script exists
script_path = script_path or script_version.script_path.name
script_name = script_name or (script_version.script.script_name
if script_version else os.path.basename(
os.path.splitext(script_path)[0]))
with get_storage_object(script_path) as so:
checksum = get_checksum(buff=so.read())
existing_version = None
try:
existing_version = ScriptVersion.objects.get(
checksum=checksum, script__script_name=script_name)
except ObjectDoesNotExist:
pass
except MultipleObjectsReturned:
# This exists because previous versions did not enforce a checksum, so multiple scriptverisons are
# possible with the same checksum.
existing_version = ScriptVersion.objects.filter(
checksum=checksum, script__script_name=script_name).order_by(
'script_version', 'script_iteration').last()
# If script_verison is None, it likely came from `addscript`
if existing_version is not None and (script_version is None or
existing_version != script_version):
return {
'valid':
False,
'errors':
errors.DuplicateScriptError(
ScriptVersion.error_messages['duplicate_script']),
'script':
existing_version,
}
local_storage = get_storage(local=True)
if script_version is not None:
# we are updating the script here or creating it through the admin
# we need to move the script to the wooey scripts directory now
# handle remotely first, because by default scripts will be saved remotely if we are using an
# ephemeral file system
old_name = script_version.script_path.name
new_name = os.path.normpath(
os.path.join(wooey_settings.WOOEY_SCRIPT_DIR, old_name)
if not old_name.startswith(wooey_settings.WOOEY_SCRIPT_DIR) else
old_name)
current_storage = get_storage(
local=not wooey_settings.WOOEY_EPHEMERAL_FILES)
current_file = current_storage.open(old_name)
if current_storage.exists(new_name):
new_name = current_storage.get_available_name(new_name)
new_path = current_storage.save(new_name, current_file)
# remove the old file
if old_name != new_name:
current_file.close()
current_storage.delete(old_name)
current_file = current_storage.open(new_path)
script_version._rename_script = True
script_version.script_path.name = new_name
script_version.save()
# download the script locally if it doesn't exist
if not local_storage.exists(new_path):
new_path = local_storage.save(new_path, current_file)
# Close the old file if it is not yet
if not current_file.closed:
current_file.close()
with get_storage_object(new_path, local=True) as so:
script = so.path
with local_storage.open(new_path) as local_handle:
local_file = local_handle.name
else:
# we got a path, if we are using a remote file system, it will be located remotely by default
# make sure we have it locally as well
if wooey_settings.WOOEY_EPHEMERAL_FILES:
remote_storage = get_storage(local=False)
with remote_storage.open(script_path) as remote_file:
local_file = local_storage.save(script_path, remote_file)
else:
with local_storage.open(script_path) as local_handle:
local_file = local_handle.name
with get_storage_object(local_file, local=True) as so:
script = so.path
if isinstance(group, ScriptGroup):
group = group.group_name
if group is None:
group = 'Wooey Scripts'
basename, extension = os.path.splitext(script)
filename = os.path.split(basename)[1]
parser = Parser(script_name=filename,
script_path=local_storage.path(local_file))
if not parser.valid:
return {
'valid': False,
'errors': errors.ParserError(parser.error),
}
# make our script
script_schema = parser.get_script_description()
script_group, created = ScriptGroup.objects.get_or_create(group_name=group)
version_string = script_schema.get('version')
if version_string is None:
version_string = '1'
try:
parse_version(version_string)
except:
sys.stderr.write(
'Error parsing version, defaulting to 1. Error message:\n {}'.
format(traceback.format_exc()))
version_string = '1'
if script_version is None:
# we are being loaded from the management command, create/update our script/version
script_kwargs = {
'script_group': script_group,
'script_name': script_name or script_schema['name']
}
version_kwargs = {
'script_version': version_string,
'script_path': local_file,
'default_version': True,
'checksum': checksum
}
# does this script already exist in the database?
script_created = Script.objects.filter(**script_kwargs).count() == 0
if script_created:
# we are creating it, add the description if we can
script_kwargs.update(
{'script_description': script_schema['description']})
wooey_script = Script(**script_kwargs)
wooey_script._script_cl_creation = True
wooey_script.save()
version_kwargs.update({'script_iteration': 1})
else:
# we're updating it
wooey_script = Script.objects.get(**script_kwargs)
if not wooey_script.script_description and script_schema[
'description']:
wooey_script.script_description = script_schema['description']
wooey_script.save()
# check if we have the version in our script version
current_versions = ScriptVersion.objects.filter(
script=wooey_script, script_version=version_string)
if current_versions.count() == 0:
next_iteration = 1
else:
# get the largest iteration and add 1 to it
next_iteration = sorted(
[i.script_iteration for i in current_versions])[-1] + 1
# disable older versions
ScriptVersion.objects.filter(script=wooey_script).update(
default_version=False)
version_kwargs.update({'script_iteration': next_iteration})
version_kwargs.update({'script': wooey_script})
script_version = ScriptVersion(**version_kwargs)
script_version._script_cl_creation = True
script_version.checksum = checksum
script_version.save()
else:
# we are being created/updated from the admin
wooey_script = script_version.script
if not wooey_script.script_description:
wooey_script.script_description = script_schema['description']
if not wooey_script.script_name:
wooey_script.script_name = script_name or script_schema['name']
past_versions = ScriptVersion.objects.filter(
script=wooey_script,
script_version=version_string).exclude(pk=script_version.pk)
if len(past_versions) == 0:
script_version.script_version = version_string
script_version.script_iteration = past_versions.count() + 1
# Make all old versions non-default
ScriptVersion.objects.filter(script=wooey_script).update(
default_version=False)
script_version.default_version = True
script_version.checksum = checksum
wooey_script.save()
script_version.save()
# make our parameters
parameter_index = 0
for parser_name, parser_inputs in six.iteritems(script_schema['inputs']):
parsers = ScriptParser.objects.filter(
name=parser_name, script_version__script=wooey_script).distinct()
if len(parsers):
parser = parsers.first()
else:
parser = ScriptParser.objects.create(name=parser_name, )
parser.save()
parser.script_version.add(script_version)
for param_group_info in parser_inputs:
param_group_name = param_group_info.get('group')
param_groups = ScriptParameterGroup.objects.filter(
group_name=param_group_name,
script_version__script=wooey_script).distinct()
# TODO: There should only ever be one, should probably do a harder enforcement of this.
if len(param_groups):
param_group = param_groups.first()
else:
param_group = ScriptParameterGroup.objects.create(
group_name=param_group_name, )
param_group.save()
param_group.script_version.add(script_version)
for param in param_group_info.get('nodes'):
# TODO: fix 'file' to be global in argparse
is_out = True if (param.get('upload', None) == False
and param.get('type') == 'file'
) else not param.get('upload', False)
script_param_kwargs = {
'short_param':
param['param'],
'script_param':
param['name'],
'is_output':
is_out,
'required':
param.get('required', False),
'form_field':
param['model'],
'default':
param.get('value'),
'input_type':
param.get('type'),
'choices':
json.dumps(param.get('choices')),
'choice_limit':
json.dumps(param.get('choice_limit', 1)),
'param_help':
param.get('help'),
'is_checked':
param.get('checked', False),
# parameter_group': param_group,
'collapse_arguments':
SPECIFY_EVERY_PARAM
not in param.get('param_action', set()),
}
parameter_index += 1
# This indicates the parameter is a positional argument. If these are changed between script versions,
# the script can break. Therefore, we have to add an additional filter on the parameter order that
# keyword arguments can ignore.
if not param['param']:
script_param_kwargs['param_order'] = parameter_index
script_params = ScriptParameter.objects.filter(
**script_param_kwargs).filter(
script_version__script=wooey_script,
parameter_group__group_name=param_group_name,
parser__name=parser_name).distinct()
if not script_params:
script_param_kwargs['parser'] = parser
script_param_kwargs['parameter_group'] = param_group
if 'param_order' not in script_param_kwargs:
script_param_kwargs['param_order'] = parameter_index
script_param, created = ScriptParameter.objects.get_or_create(
**script_param_kwargs)
script_param.script_version.add(script_version)
else:
# If we are here, the script parameter exists and has not changed since the last update. We can simply
# point the new script at the old script parameter. This lets us clone old scriptversions and have their
# parameters still auto populate.
script_param = script_params[0]
if 'param_order' not in script_param_kwargs:
script_param.param_order = parameter_index
script_param.script_version.add(script_version)
script_param.save()
return {
'valid': True,
'errors': None,
'script': script_version,
}
def add_wooey_script(script_version=None, script_path=None, group=None):
# There is a class called 'Script' which contains the general information about a script. However, that is not where the file details
# of the script lie. That is the ScriptVersion model. This allows the end user to tag a script as a favorite/etc. and set
# information such as script descriptions/names that do not constantly need to be updated with every version change. Thus,
# a ScriptVersion stores the file info and such.
from ..models import Script, ScriptGroup, ScriptParameter, ScriptParameterGroup, ScriptVersion
# if we are adding through the admin, at this point the file will be saved already and this method will be receiving
# the scriptversion object. Otherwise, we are adding through the managementment command. In this case, the file will be
# a location and we need to setup the Script and ScriptVersion in here.
local_storage = get_storage(local=True)
if script_version is not None:
# we are updating the script here or creating it through the admin
# we need to move the script to the wooey scripts directory now
# handle remotely first, because by default scripts will be saved remotely if we are using an
# ephemeral file system
old_name = script_version.script_path.name
new_name = os.path.normpath(
os.path.join(wooey_settings.WOOEY_SCRIPT_DIR, old_name)
if not old_name.startswith(wooey_settings.WOOEY_SCRIPT_DIR) else
old_name)
current_storage = get_storage(
local=not wooey_settings.WOOEY_EPHEMERAL_FILES)
current_file = current_storage.open(old_name)
if current_storage.exists(new_name):
new_name = current_storage.get_available_name(new_name)
new_path = current_storage.save(new_name, current_file)
# remove the old file
if old_name != new_name:
current_file.close()
current_storage.delete(old_name)
current_file = current_storage.open(new_path)
script_version._rename_script = True
script_version.script_path.name = new_name
script_version.save()
# download the script locally if it doesn't exist
if not local_storage.exists(new_path):
new_path = local_storage.save(new_path, current_file)
script = get_storage_object(new_path, local=True).path
local_file = local_storage.open(new_path).name
else:
# we got a path, if we are using a remote file system, it will be located remotely by default
# make sure we have it locally as well
if wooey_settings.WOOEY_EPHEMERAL_FILES:
remote_storage = get_storage(local=False)
remote_file = remote_storage.open(script_path)
local_file = local_storage.save(script_path, remote_file)
else:
local_file = local_storage.open(script_path).name
script = get_storage_object(local_file, local=True).path
if isinstance(group, ScriptGroup):
group = group.group_name
if group is None:
group = 'Wooey Scripts'
basename, extension = os.path.splitext(script)
filename = os.path.split(basename)[1]
parser = Parser(script_name=filename,
script_path=local_storage.path(local_file))
if not parser.valid:
return {'valid': False, 'errors': parser.error}
# make our script
d = parser.get_script_description()
script_group, created = ScriptGroup.objects.get_or_create(group_name=group)
version_string = d.get('version')
if version_string is None:
version_string = '1'
try:
parse_version(version_string)
except:
sys.stderr.write(
'Error parsing version, defaulting to 1. Error message:\n {}'.
format(traceback.format_exc()))
version_string = '1'
if script_version is None:
# we are being loaded from the management command, create/update our script/version
script_kwargs = {
'script_group': script_group,
'script_name': d['name']
}
version_kwargs = {
'script_version': version_string,
'script_path': local_file,
'default_version': True
}
# does this script already exist in the database?
script_created = Script.objects.filter(**script_kwargs).count() == 0
if script_created:
# we are creating it, add the description if we can
script_kwargs.update({'script_description': d['description']})
wooey_script = Script(**script_kwargs)
wooey_script._script_cl_creation = True
wooey_script.save()
version_kwargs.update({'script_iteration': 1})
else:
# we're updating it
wooey_script = Script.objects.get(**script_kwargs)
if not wooey_script.script_description and d['description']:
wooey_script.script_description = d['description']
wooey_script.save()
# check if we have the version in our script version
current_versions = ScriptVersion.objects.filter(
script=wooey_script, script_version=version_string)
if current_versions.count() == 0:
next_iteration = 1
# disable older versions
ScriptVersion.objects.filter(
script=wooey_script, script_version=version_string).update(
default_version=False)
else:
# get the largest iteration and add 1 to it
next_iteration = sorted(
[i.script_iteration for i in current_versions])[-1] + 1
version_kwargs.update({'script_iteration': next_iteration})
version_kwargs.update({'script': wooey_script})
script_version = ScriptVersion(**version_kwargs)
script_version._script_cl_creation = True
script_version.save()
else:
# we are being created/updated from the admin
if not script_version.script.script_description:
script_version.script.script_description = d['description']
if not script_version.script.script_name:
script_version.script.script_name = d['name']
past_versions = ScriptVersion.objects.filter(
script=script_version.script,
script_version=version_string).exclude(pk=script_version.pk)
script_version.script_iteration = past_versions.count() + 1
past_versions.update(default_version=False)
script_version.default_version = True
script_version.script.save()
script_version.save()
# make our parameters
for param_group_info in d['inputs']:
param_group, created = ScriptParameterGroup.objects.get_or_create(
group_name=param_group_info.get('group'),
script_version=script_version)
for param in param_group_info.get('nodes'):
# TODO: fix 'file' to be global in argparse
is_out = True if param.get('upload', None) is False and param.get(
'type') == 'file' else not param.get('upload', False)
script_param, created = ScriptParameter.objects.get_or_create(
script_version=script_version,
short_param=param['param'],
script_param=param['name'],
is_output=is_out,
required=param.get('required', False),
form_field=param['model'],
default=param.get('value'),
input_type=param.get('type'),
choices=json.dumps(param.get('choices')),
choice_limit=json.dumps(param.get('choice_limit', 1)),
param_help=param.get('help'),
is_checked=param.get('checked', False),
parameter_group=param_group)
return {'valid': True, 'errors': None, 'script': script_version}
def add_wooey_script(script_version=None, script_path=None, group=None):
# There is a class called 'Script' which contains the general information about a script. However, that is not where the file details
# of the script lie. That is the ScriptVersion model. This allows the end user to tag a script as a favorite/etc. and set
# information such as script descriptions/names that do not constantly need to be updated with every version change. Thus,
# a ScriptVersion stores the file info and such.
from ..models import Script, ScriptGroup, ScriptParameter, ScriptParameterGroup, ScriptVersion
# if we are adding through the admin, at this point the file will be saved already and this method will be receiving
# the scriptversion object. Otherwise, we are adding through the managementment command. In this case, the file will be
# a location and we need to setup the Script and ScriptVersion in here.
local_storage = get_storage(local=True)
if script_version is not None:
# we are updating the script here or creating it through the admin
# we need to move the script to the wooey scripts directory now
# handle remotely first, because by default scripts will be saved remotely if we are using an
# ephemeral file system
old_name = script_version.script_path.name
new_name = os.path.normpath(os.path.join(wooey_settings.WOOEY_SCRIPT_DIR, old_name) if not old_name.startswith(wooey_settings.WOOEY_SCRIPT_DIR) else old_name)
current_storage = get_storage(local=not wooey_settings.WOOEY_EPHEMERAL_FILES)
current_file = current_storage.open(old_name)
if current_storage.exists(new_name):
new_name = current_storage.get_available_name(new_name)
new_path = current_storage.save(new_name, current_file)
# remove the old file
if old_name != new_name:
current_storage.delete(old_name)
script_version._rename_script = True
script_version.script_path.name = new_name
script_version.save()
# download the script locally if it doesn't exist
if not local_storage.exists(new_path):
new_path = local_storage.save(new_path, current_file)
script = get_storage_object(new_path, local=True).path
local_file = local_storage.open(new_path).name
else:
# we got a path, if we are using a remote file system, it will be located remotely by default
# make sure we have it locally as well
if wooey_settings.WOOEY_EPHEMERAL_FILES:
remote_storage = get_storage(local=False)
remote_file = remote_storage.open(script_path)
local_file = local_storage.save(script_path, remote_file)
else:
local_file = local_storage.open(script_path).name
script = get_storage_object(local_file, local=True).path
if isinstance(group, ScriptGroup):
group = group.group_name
if group is None:
group = 'Wooey Scripts'
basename, extension = os.path.splitext(script)
filename = os.path.split(basename)[1]
parser = Parser(script_name=filename, script_path=local_storage.path(local_file))
if not parser.valid:
return {'valid': False, 'errors': parser.error}
# make our script
d = parser.get_script_description()
script_group, created = ScriptGroup.objects.get_or_create(group_name=group)
version_string = d.get('version')
if version_string is None:
version_string = '1'
try:
parse_version(version_string)
except:
sys.stderr.write('Error parsing version, defaulting to 1. Error message:\n {}'.format(traceback.format_exc()))
version_string = '1'
if script_version is None:
# we are being loaded from the management command, create/update our script/version
script_kwargs = {'script_group': script_group, 'script_name': d['name']}
version_kwargs = {'script_version': version_string, 'script_path': local_file, 'default_version': True}
# does this script already exist in the database?
script_created = Script.objects.filter(**script_kwargs).count() == 0
if script_created:
# we are creating it, add the description if we can
script_kwargs.update({'script_description': d['description']})
wooey_script = Script(**script_kwargs)
wooey_script._script_cl_creation = True
wooey_script.save()
version_kwargs.update({'script_iteration': 1})
else:
# we're updating it
wooey_script = Script.objects.get(**script_kwargs)
if not wooey_script.script_description and d['description']:
wooey_script.script_description = d['description']
wooey_script.save()
# check if we have the version in our script version
current_versions = ScriptVersion.objects.filter(script=wooey_script, script_version=version_string)
if current_versions.count() == 0:
next_iteration = 1
# disable older versions
ScriptVersion.objects.filter(script=wooey_script, script_version=version_string).update(default_version=False)
else:
# get the largest iteration and add 1 to it
next_iteration = sorted([i.script_iteration for i in current_versions])[-1]+1
version_kwargs.update({'script_iteration': next_iteration})
version_kwargs.update({'script': wooey_script})
script_version = ScriptVersion(**version_kwargs)
script_version._script_cl_creation = True
script_version.save()
else:
# we are being created/updated from the admin
if not script_version.script.script_description:
script_version.script.script_description = d['description']
if not script_version.script.script_name:
script_version.script.script_name = d['name']
past_versions = ScriptVersion.objects.filter(script=script_version.script, script_version=version_string).exclude(pk=script_version.pk)
script_version.script_iteration = past_versions.count()+1
past_versions.update(default_version=False)
script_version.default_version = True
script_version.script.save()
script_version.save()
# make our parameters
for param_group_info in d['inputs']:
param_group, created = ScriptParameterGroup.objects.get_or_create(group_name=param_group_info.get('group'), script_version=script_version)
for param in param_group_info.get('nodes'):
# TODO: fix 'file' to be global in argparse
is_out = True if param.get('upload', None) is False and param.get('type') == 'file' else not param.get('upload', False)
script_param, created = ScriptParameter.objects.get_or_create(script_version=script_version, short_param=param['param'], script_param=param['name'],
is_output=is_out, required=param.get('required', False),
form_field=param['model'], default=param.get('default'), input_type=param.get('type'),
choices=json.dumps(param.get('choices')), choice_limit=json.dumps(param.get('choice_limit', 1)),
param_help=param.get('help'), is_checked=param.get('checked', False),
parameter_group=param_group)
return {'valid': True, 'errors': None, 'script': script_version}
def test_script_version(self):
script_path = os.path.join(self.script_dir, 'choices.py')
parser = Parser(script_path=script_path)
description = parser.get_script_description()
self.assertEqual(description['version'], '2' if six.PY2 else '3')
def test_script_version(self):
script_path = os.path.join(self.script_dir, 'choices.py')
parser = Parser(script_path=script_path)
description = parser.get_script_description()
self.assertEqual(description['version'], '2' if six.PY2 else '3')