def _perform_install(target=None, flavor=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore, custom_add = _read_main_config()
if target is None or target == "packages":
# can only install native packages if we have sudo access.
if env.use_sudo:
_configure_and_install_native_packages(env, pkg_install)
else:
_connect_native_packages(env, pkg_install, lib_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore, custom_add)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.edition.post_install(pkg_install=pkg_install)
env.flavor.post_install()
if target is None or target == "cleanup":
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in ["TRUE", "YES"]:
_cleanup_ec2(env)
def _perform_install(target=None, flavor=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore, custom_add = _read_main_config()
if target is None or target == "packages":
# can only install native packages if we have sudo access.
if env.use_sudo:
_configure_and_install_native_packages(env, pkg_install)
else:
_connect_native_packages(env, pkg_install, lib_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore, custom_add)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.edition.post_install(pkg_install=pkg_install)
env.flavor.post_install()
if target is None or target == "cleanup":
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in [
"TRUE", "YES"
]:
_cleanup_ec2(env)
def _perform_install(target=None, flavor=None, more_custom_add=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore, custom_add = _read_main_config()
if more_custom_add:
if custom_add is None:
custom_add = {}
for k, vs in more_custom_add.iteritems():
if k in custom_add:
custom_add[k].extend(vs)
else:
custom_add[k] = vs
if target is None or target == "packages":
env.keep_isolated = getattr(env, "keep_isolated",
"false").lower() in ["true", "yes"]
# Only touch system information if we're not an isolated installation
if not env.keep_isolated:
# can only install native packages if we have sudo access or are root
if env.use_sudo or env.safe_run_output("whoami").strip() == "root":
_configure_and_install_native_packages(env, pkg_install)
else:
_connect_native_packages(env, pkg_install, lib_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore, custom_add)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "brew":
install_brew(flavor=flavor, automated=True)
if target is None or target == "conda":
install_conda(flavor=flavor, automated=True)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.flavor.post_install()
if "is_ec2_image" in env and env.is_ec2_image.upper() in [
"TRUE", "YES"
]:
_freenx_scripts(env)
if pkg_install is not None and 'cloudman' in pkg_install:
_configure_cloudman(env)
if target is None or target == "cleanup":
if env.use_sudo:
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in [
"TRUE", "YES"
]:
_cleanup_ec2(env)
def _perform_install(target=None, flavor=None, more_custom_add=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore, custom_add = _read_main_config()
if more_custom_add:
if custom_add is None:
custom_add = {}
for k, vs in more_custom_add.iteritems():
if k in custom_add:
custom_add[k].extend(vs)
else:
custom_add[k] = vs
if target is None or target == "packages":
env.keep_isolated = getattr(env, "keep_isolated", "false").lower() in ["true", "yes"]
# Only touch system information if we're not an isolated installation
if not env.keep_isolated:
# can only install native packages if we have sudo access or are root
if env.use_sudo or env.safe_run_output("whoami").strip() == "root":
_configure_and_install_native_packages(env, pkg_install)
else:
_connect_native_packages(env, pkg_install, lib_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore, custom_add)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "brew":
install_brew(flavor=flavor, automated=True)
if target is None or target == "conda":
install_conda(flavor=flavor, automated=True)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.flavor.post_install()
if "is_ec2_image" in env and env.is_ec2_image.upper() in ["TRUE", "YES"]:
_freenx_scripts(env)
if pkg_install is not None and 'cloudman' in pkg_install:
_configure_cloudman(env)
if target is None or target == "cleanup":
if env.use_sudo:
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in ["TRUE", "YES"]:
_cleanup_ec2(env)
def _perform_install(target=None, flavor=None, more_custom_add=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore, custom_add = _read_main_config()
if more_custom_add:
if custom_add is None:
custom_add = {}
for k, vs in more_custom_add.iteritems():
if k in custom_add:
custom_add[k].extend(vs)
else:
custom_add[k] = vs
if target is None or target == "packages":
env.keep_isolated = getattr(env, "keep_isolated",
"false").lower() in ["true", "yes"]
# can only install native packages if we have sudo access.
if env.use_sudo:
_configure_and_install_native_packages(env, pkg_install)
elif not env.keep_isolated:
_connect_native_packages(env, pkg_install, lib_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore, custom_add)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "brew":
install_brew(flavor=flavor)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.edition.post_install(pkg_install=pkg_install)
env.flavor.post_install()
if target is None or target == "cleanup":
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in [
"TRUE", "YES"
]:
_cleanup_ec2(env)
def _perform_install(target=None, flavor=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore = _read_main_config()
if target is None or target == "packages":
# can only install native packages if we have sudo access.
if env.use_sudo:
_configure_and_install_native_packages(env, pkg_install)
else:
_connect_native_packages(env, pkg_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.edition.post_install(pkg_install=pkg_install)
env.flavor.post_install()
if target is None or target == "cleanup":
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in [
"TRUE", "YES"
]:
if env.distribution in ["ubuntu"]:
# For the time being (Dec 2012), must install development version
# of cloud-init because of a boto & cloud-init bug:
# https://bugs.launchpad.net/cloud-init/+bug/1068801
sudo(
'wget --output-document=cloud-init_0.7.1-0ubuntu4_all.deb '
+
'https://launchpad.net/ubuntu/+archive/primary/+files/cloud-init_0.7.1-0ubuntu4_all.deb'
)
sudo("dpkg -i cloud-init_0.7.1-0ubuntu4_all.deb")
sudo("rm -f cloud-init_0.7.1-0ubuntu4_all.deb")
_cleanup_ec2(env)
def _perform_install(target=None, flavor=None, more_custom_add=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore, custom_add = _read_main_config()
if more_custom_add:
if custom_add is None:
custom_add = {}
for k, vs in more_custom_add.iteritems():
if k in custom_add:
custom_add[k].extend(vs)
else:
custom_add[k] = vs
if target is None or target == "packages":
env.keep_isolated = getattr(env, "keep_isolated", "false").lower() in ["true", "yes"]
# can only install native packages if we have sudo access.
if env.use_sudo:
_configure_and_install_native_packages(env, pkg_install)
elif not env.keep_isolated:
_connect_native_packages(env, pkg_install, lib_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore, custom_add)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "brew":
install_brew(flavor=flavor)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.edition.post_install(pkg_install=pkg_install)
env.flavor.post_install()
if target is None or target == "cleanup":
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in ["TRUE", "YES"]:
_cleanup_ec2(env)
def _perform_install(target=None, flavor=None):
"""
Once CBL/fabric environment is setup, this method actually
runs the required installation procedures.
See `install_biolinux` for full details on arguments
`target` and `flavor`.
"""
pkg_install, lib_install, custom_ignore = _read_main_config()
if target is None or target == "packages":
# can only install native packages if we have sudo access.
if env.use_sudo:
_configure_and_install_native_packages(env, pkg_install)
else:
_connect_native_packages(env, pkg_install)
if env.nixpkgs: # ./doc/nixpkgs.md
_setup_nix_sources()
_nix_packages(pkg_install)
if target is None or target == "custom":
_custom_installs(pkg_install, custom_ignore)
if target is None or target == "chef_recipes":
_provision_chef_recipes(pkg_install, custom_ignore)
if target is None or target == "puppet_classes":
_provision_puppet_classes(pkg_install, custom_ignore)
if target is None or target == "libraries":
_do_library_installs(lib_install)
if target is None or target == "post_install":
env.edition.post_install(pkg_install=pkg_install)
env.flavor.post_install()
if target is None or target == "cleanup":
_cleanup_space(env)
if "is_ec2_image" in env and env.is_ec2_image.upper() in ["TRUE", "YES"]:
if env.distribution in ["ubuntu"]:
# For the time being (Dec 2012), must install development version
# of cloud-init because of a boto & cloud-init bug:
# https://bugs.launchpad.net/cloud-init/+bug/1068801
sudo(
"wget --output-document=cloud-init_0.7.1-0ubuntu4_all.deb "
+ "https://launchpad.net/ubuntu/+archive/primary/+files/cloud-init_0.7.1-0ubuntu4_all.deb"
)
sudo("dpkg -i cloud-init_0.7.1-0ubuntu4_all.deb")
sudo("rm -f cloud-init_0.7.1-0ubuntu4_all.deb")
_cleanup_ec2(env)