def __init__(self, table_path):
# -------------------------------------------------------------------
# Reset CV error switch
# -------------------------------------------------------------------
self.errors = 0
# -------------------------------------------------------------------
# Initialize table path
# -------------------------------------------------------------------
self.cmip6_table_path = os.path.normpath(table_path)
# -------------------------------------------------------------------
# Initialize attributes dictionaries
# -------------------------------------------------------------------
self.dictGbl = dict()
self.dictVar = dict()
# -------------------------------------------------------------------
# call setup() to clean all 'C' internal memory.
# -------------------------------------------------------------------
cmip6_cv.setup(inpath="../Tables",
exit_control=cmip6_cv.CMOR_EXIT_ON_WARNING)
# -------------------------------------------------------------------
# Set Control Vocabulary file to use (default from cmor.h)
# -------------------------------------------------------------------
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.GLOBAL_CV_FILENAME,
cmip6_cv.TABLE_CONTROL_FILENAME)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_PATH_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_PATH_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_NAME_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_FILE_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.GLOBAL_ATT_FURTHERINFOURLTMPL,
cmip6_cv.CMOR_DEFAULT_FURTHERURL_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.CMOR_AXIS_ENTRY_FILE,
"CMIP6_coordinate.json")
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.CMOR_FORMULA_VAR_FILE,
"CMIP6_formula_terms.json")
def __init__(self, args):
# -------------------------------------------------------------------
# Initilaze arrays
# -------------------------------------------------------------------
self.cmip6_table = args.cmip6_table
# -------------------------------------------------------------------
# call setup() to clean all 'C' internal memory.
# -------------------------------------------------------------------
cmip6_cv.setup(inpath="../Tables", exit_control=cmip6_cv.CMOR_NORMAL)
# -------------------------------------------------------------------
# Set Control Vocabulary file to use (default from cmor.h)
# -------------------------------------------------------------------
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.GLOBAL_CV_FILENAME,
cmip6_cv.TABLE_CONTROL_FILENAME)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_PATH_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_PATH_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_NAME_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_FILE_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.GLOBAL_ATT_FURTHERINFOURLTMPL,
cmip6_cv.CMOR_DEFAULT_FURTHERURL_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.CMOR_AXIS_ENTRY_FILE,
"CMIP6_coordinate.json")
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.CMOR_FORMULA_VAR_FILE,
"CMIP6_formula_terms.json")
# -------------------------------------------------------------------
# Load CMIP6 table into memory
# -------------------------------------------------------------------
self.table_id = cmip6_cv.load_table(self.cmip6_table)
def __init__(self, args):
# -------------------------------------------------------------------
# Initilaze arrays
# -------------------------------------------------------------------
self.cmip6_table = args.cmip6_table
self.infile = args.infile
self.attributes = self.infile.listglobal()
self.variables = self.infile.listvariable()
# -------------------------------------------------------------------
# find variable that contains a "history" (should only be one)
# -------------------------------------------------------------------
self.var = [var for var in self.variables if 'history' in self.infile.listattribute(var)]
if((self.var == []) or (len(self.var) > 1)):
raise KeyboardInterrupt
self.keys = self.infile.listattribute(var)
# -------------------------------------------------------------------
# call setup() to clean all 'C' internal memory.
# -------------------------------------------------------------------
cmip6_cv.setup(inpath="../Tables", exit_control=cmip6_cv.CMOR_NORMAL)
# -------------------------------------------------------------------
# Set Control Vocabulary file to use (default from cmor.h)
# -------------------------------------------------------------------
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.GLOBAL_CV_FILENAME, cmip6_cv.TABLE_CONTROL_FILENAME)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_PATH_TEMPLATE, cmip6_cv.CMOR_DEFAULT_PATH_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_NAME_TEMPLATE, cmip6_cv.CMOR_DEFAULT_FILE_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.GLOBAL_ATT_FURTHERINFOURLTMPL, cmip6_cv.CMOR_DEFAULT_FURTHERURL_TEMPLATE)
# -------------------------------------------------------------------
# Create alist of all Global Attributes and set "dataset"
# -------------------------------------------------------------------
self.dictGbl = {key: self.infile.getglobal(key) for key in self.attributes}
ierr = [cmip6_cv.set_cur_dataset_attribute(key, value) for key, value in self.dictGbl.iteritems()]
# -------------------------------------------------------------------
# Create a dictionnary of attributes for var
# -------------------------------------------------------------------
self.dictVars = dict((y, x) for y, x in
[(key, value) for key in self.keys
if self.infile.getattribute(self.var[0], key) is not None
for value in [self.infile.getattribute(self.var[0], key)]])
# -------------------------------------------------------------------
# Load CMIP6 table into memory
# -------------------------------------------------------------------
self.table_id = cmip6_cv.load_table(self.cmip6_table)
def __init__(self, table_path):
# -------------------------------------------------------------------
# Reset CV error switch
# -------------------------------------------------------------------
self.errors = 0
# -------------------------------------------------------------------
# Initialize table path
# -------------------------------------------------------------------
self.cmip6_table_path = os.path.normpath(table_path)
# -------------------------------------------------------------------
# Initialize attributes dictionaries
# -------------------------------------------------------------------
self.dictGbl = dict()
self.dictVar = dict()
# -------------------------------------------------------------------
# call setup() to clean all 'C' internal memory.
# -------------------------------------------------------------------
cmip6_cv.setup(inpath="../Tables", exit_control=cmip6_cv.CMOR_EXIT_ON_WARNING)
# -------------------------------------------------------------------
# Set Control Vocabulary file to use (default from cmor.h)
# -------------------------------------------------------------------
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.GLOBAL_CV_FILENAME,
cmip6_cv.TABLE_CONTROL_FILENAME)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.FILE_PATH_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_PATH_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.FILE_NAME_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_FILE_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.GLOBAL_ATT_FURTHERINFOURLTMPL,
cmip6_cv.CMOR_DEFAULT_FURTHERURL_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.CMOR_AXIS_ENTRY_FILE,
"CMIP6_coordinate.json")
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.CMOR_FORMULA_VAR_FILE,
"CMIP6_formula_terms.json")
def __init__(self, args):
# -------------------------------------------------------------------
# Initilaze arrays
# -------------------------------------------------------------------
self.cmip6_table = args.cmip6_table
self.infile = args.infile
self.attributes = self.infile.listglobal()
self.variables = self.infile.listvariable()
if args.variable is not None:
self.var = [args.variable]
else:
# -------------------------------------------------------------------
# find variable that contains a "history" (should only be one)
# -------------------------------------------------------------------
self.var = [
var for var in self.variables
if 'history' in self.infile.listattribute(var)
]
if ((self.var == []) or (len(self.var) > 1)):
print bcolors.FAIL
print "!!!!!!!!!!!!!!!!!!!!!!!!!"
print "! Error: The input file does not have an history attribute and the CMIP6 variable could not be found"
print "! Please use the --variable option to specify your CMIP6 variable"
print "! Check your file or use CMOR 3.x to achieve compliance for ESGF publication."
print "!!!!!!!!!!!!!!!!!!!!!!!!!"
print bcolors.ENDC
raise KeyboardInterrupt
try:
self.keys = self.infile.listattribute(self.var[0])
except:
print bcolors.FAIL
print "!!!!!!!!!!!!!!!!!!!!!!!!!"
print "! Error: The variable " + self.var[
0] + " could not be found"
print "! Check your file variables "
print "!!!!!!!!!!!!!!!!!!!!!!!!!"
print bcolors.ENDC
raise
# -------------------------------------------------------------------
# call setup() to clean all 'C' internal memory.
# -------------------------------------------------------------------
cmip6_cv.setup(inpath="../Tables", exit_control=cmip6_cv.CMOR_NORMAL)
# -------------------------------------------------------------------
# Set Control Vocabulary file to use (default from cmor.h)
# -------------------------------------------------------------------
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.GLOBAL_CV_FILENAME,
cmip6_cv.TABLE_CONTROL_FILENAME)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_PATH_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_PATH_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_NAME_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_FILE_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.GLOBAL_ATT_FURTHERINFOURLTMPL,
cmip6_cv.CMOR_DEFAULT_FURTHERURL_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.CMOR_AXIS_ENTRY_FILE,
"CMIP6_coordinate.json")
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.CMOR_FORMULA_VAR_FILE,
"CMIP6_formula_terms.json")
# -------------------------------------------------------------------
# Create alist of all Global Attributes and set "dataset"
# -------------------------------------------------------------------
self.dictGbl = {
key: self.infile.getglobal(key)
for key in self.attributes
}
ierr = [
cmip6_cv.set_cur_dataset_attribute(key, value)
for key, value in self.dictGbl.iteritems()
]
# -------------------------------------------------------------------
# Create a dictionnary of attributes for var
# -------------------------------------------------------------------
self.dictVars = dict(
(y, x) for y, x in
[(key, value) for key in self.keys
if self.infile.getattribute(self.var[0], key) is not None
for value in [self.infile.getattribute(self.var[0], key)]])
# -------------------------------------------------------------------
# Load CMIP6 table into memory
# -------------------------------------------------------------------
self.table_id = cmip6_cv.load_table(self.cmip6_table)
def __init__(self, args):
# -------------------------------------------------------------------
# Initilaze arrays
# -------------------------------------------------------------------
self.cmip6_table = args.cmip6_table
self.infile = args.infile
self.attributes = self.infile.listglobal()
self.variables = self.infile.listvariable()
# -------------------------------------------------------------------
# find variable that contains a "cell_methods" (should only be one)
# -------------------------------------------------------------------
self.var = [
var for var in self.variables
if 'history' in self.infile.listattribute(var)
]
if ((self.var == []) or (len(self.var) > 1)):
raise KeyboardInterrupt
self.keys = self.infile.listattribute(var)
# -------------------------------------------------------------------
# call setup() to clean all 'C' internal memory.
# -------------------------------------------------------------------
# cmip6_cv.setup(inpath="../Tables", exit_control=cmip6_cv.CMOR_EXIT_ON_WARNING)
cmip6_cv.setup(inpath="../Tables", exit_control=cmip6_cv.CMOR_NORMAL)
# -------------------------------------------------------------------
# Set Control Vocabulary file to use (default from cmor.h)
# -------------------------------------------------------------------
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.GLOBAL_CV_FILENAME,
cmip6_cv.TABLE_CONTROL_FILENAME)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_PATH_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_PATH_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(cmip6_cv.FILE_NAME_TEMPLATE,
cmip6_cv.CMOR_DEFAULT_FILE_TEMPLATE)
cmip6_cv.set_cur_dataset_attribute(
cmip6_cv.GLOBAL_ATT_FURTHERINFOURLTMPL,
cmip6_cv.CMOR_DEFAULT_FURTHERURL_TEMPLATE)
# -------------------------------------------------------------------
# Create alist of all Global Attributes and set "dataset"
# -------------------------------------------------------------------
self.dictGbl = {
key: self.infile.getglobal(key)
for key in self.attributes
}
ierr = [
cmip6_cv.set_cur_dataset_attribute(key, value)
for key, value in self.dictGbl.iteritems()
]
# -------------------------------------------------------------------
# Create a dictionnary of attributes for var
# -------------------------------------------------------------------
self.dictVars = dict(
(y, x) for y, x in
[(key, value) for key in self.keys
if self.infile.getattribute(self.var[0], key) is not None
for value in [self.infile.getattribute(self.var[0], key)]])
# -------------------------------------------------------------------
# Load CMIP6 table into memory
# -------------------------------------------------------------------
self.table_id = cmip6_cv.load_table(self.cmip6_table)