def __init__(self, name, config={}):
super().__init__(name, config)
## Connection to the XY stage controller (serial.Serial instance).
self._proxy = Pyro4.Proxy(config.get('uri'))
## Lock around sending commands to the XY stage controller.
self.xyLock = threading.Lock()
## Cached copy of the stage's position.
self.positionCache = (None, None)
## Target positions for movement in X and Y.
self.motionTargets = [None, None]
## Flag to show that sendPositionUpdates is running.
self.sendingPositionUpdates = False
## Status dict updated by remote.
self.status = {}
## Keys for status items that should be logged
self.logger = valueLogger.ValueLogger(
name, keys=list(map('t_'.__add__, self._temperature_names)))
try:
xlim = self._proxy.get_value_limits('MotorSetpointX')
ylim = self._proxy.get_value_limits('MotorSetpointY')
except:
xlim, ylim = zip(*DEFAULT_LIMITS)
# _proxy may return (0,0) if it can't query the hardware.
if not any(xlim):
xlim, _ = zip(*DEFAULT_LIMITS)
if not any(ylim):
_, ylim = zip(*DEFAULT_LIMITS)
self.hardlimits = tuple(zip(xlim, ylim))
self.softlimits = self.hardlimits
events.subscribe(events.USER_ABORT, self.onAbort)
def __init__(self, name, config={}):
super(LinkamStage, self).__init__(name, config)
## Connection to the XY stage controller (serial.Serial instance).
self._proxy = Pyro4.Proxy(config.get('uri'))
## Lock around sending commands to the XY stage controller.
self.xyLock = threading.Lock()
## Cached copy of the stage's position.
self.positionCache = (None, None)
## Target positions for movement in X and Y.
self.motionTargets = [None, None]
## Time of last action using the stage.
self.lastPiezoTime = time.time()
## Stage velocity
self.stageVelocity = [None, None]
## Flag to show that sendPositionUpdates is running.
self.sendingPositionUpdates = False
## Status dict updated by remote.
self.status = {}
## Keys for status items that should be logged
self.logger = valueLogger.ValueLogger(
name, keys=list(map('t_'.__add__, self._temperature_names)))
try:
xlim = self._proxy.get_value_limits('MotorSetpointX')
ylim = self._proxy.get_value_limits('MotorSetpointY')
except:
xlim, ylim = zip(*DEFAULT_LIMITS)
# _proxy may return (0,0) if it can't query the hardware.
if not any(xlim):
xlim, _ = zip(*DEFAULT_LIMITS)
if not any(ylim):
_, ylim = zip(*DEFAULT_LIMITS)
self.hardlimits = tuple(zip(xlim, ylim))
self.softlimits = self.hardlimits
if not self.getPrimitives():
xoff = self.config.get('xoffset', 0)
yoff = self.config.get('yoffset', 0)
xmid = xoff + (xlim[0] + xlim[1]) / 2
ymid = yoff + (ylim[0] + ylim[1]) / 2
radius = 1500
centres = [-4000, 0, 4000]
self.primitives = [
'c %f %f %f' % (xmid + dx, ymid, radius) for dx in centres
]
events.subscribe('user abort', self.onAbort)
#store and recall condensor LED status.
events.subscribe('save exposure settings', self.onSaveSettings)
events.subscribe('load exposure settings', self.onLoadSettings)
def __init__(self, name, config={}):
super().__init__(name, config)
#get DIO control lines from config file
linestring = config.get('lines', '')
self.lines = linestring.split(',')
#Get microscope paths from config file.
paths_linesString = config.get('paths', '')
self.excitation = []
self.excitationMaps = []
self.objective = []
self.objectiveMaps = []
self.emission = []
self.emissionMaps = []
for path in (paths_linesString.split(';')):
parts = path.split(':')
if (parts[0] == 'objective'):
self.objective.append(parts[1])
self.objectiveMaps.append(parts[2])
elif (parts[0] == 'excitation'):
self.excitation.append(parts[1])
self.excitationMaps.append(parts[2])
elif (parts[0] == 'emission'):
self.emission.append(parts[1])
self.emmisionMaps.append(parts[2])
#IMD 20150208 this should go into config file but dont understand how t define an array there
#this stuff just gets set as a raw string.
self.PLOT_COLORS = ['r', 'g', 'b', 'c', 'm', 'y', 'k']
## Labels to use for lines in the plot.
self.LEGENDS = ['X-nano', 'Y-nano', 'Z-nano', 'Stage', 'Block', 'Room']
## How we rearrange the incoming data so that it displays e.g. the nanomover
# sensors in order.
#DATA_REORDER = [1, 2, 4, 0, 5, 3]
self.DATA_REORDER = [0, 1]
self.makeOutputWindow = makeOutputWindow
self.buttonName = 'ni6036e'
## Pyro4.Proxy for the "NI" portion of the program (mirror flips and
# a few utility functions).
self.niConnection = None
## cockpit.util.connection.Connection for the temperature sensors.
self.temperatureConnection = None
## cockpit.util.connection.Connection for the light sensor.
self.lightConnection = None
## Maps light modes to the mirror settings for those modes, as a list
#IMD 20140806
#map paths to flips.
self.modeToFlips = collections.OrderedDict()
for i in range(len(self.excitation)):
self.modeToFlips[self.excitation[i]] = []
for flips in self.excitationMaps[i].split('|'):
flipsList = flips.split(',')
flipsInt = [int(flipsList[0]), int(flipsList[1])]
self.modeToFlips[self.excitation[i]].append(flipsInt)
#map objectives to flips.
self.objectiveToFlips = collections.OrderedDict()
for i in range(len(self.objective)):
print(self.objectiveMaps)
self.objectiveToFlips[self.objective[i]] = []
if (self.objectiveMaps[i]):
for flips in self.objectiveMaps[i].split('|'):
flipsList = flips.split(',')
flipsInt = [int(flipsList[0]), int(flipsList[1])]
self.objectiveToFlips[self.objective[i]].append(flipsInt)
self.lightPathButtons = []
## Current light path mode.
self.curExMode = None
self.curStageMode = None
self.curDetMode = None
self.logger = valueLogger.ValueLogger(name)