def make_tmp_fa(config):
workdir = config["input"]["gomap_dir"] + "/"
fa_file = workdir + "input/" + config["input"]["fasta"]
tmp_fa_base = workdir + config["data"]["mixed-method"]["preprocess"][
"blast_out"] + "/temp/" + config["input"]["basename"]
small_seqs = config["data"]["mixed-method"]["preprocess"]["small_seqs"]
split_fasta(fa_file, small_seqs, tmp_fa_base)
def process_fasta(config):
workdir = config["input"]["gomap_dir"] + "/"
fa_file = workdir + "input/" + config["input"]["fasta"]
split_base = workdir + "/" + config["input"]["split_path"] + "/" + config[
"input"]["basename"]
num_seqs = config["input"]["small_seqs"]
split_fasta(fa_file, int(num_seqs), split_base)