def test_stdout_input_as_lines(self):
"""Test Unafold stdout input as lines"""
u = hybrid_ss_min(InputHandler="_input_as_lines")
exp = "\n".join(unafold_stdout)
res = u(self.input)
obs = res["StdOut"].read()
self.assertEqual(obs, exp)
self.assertEqual(res["ExitStatus"], 0)
res.cleanUp()
def test_stdout_input_as_lines(self):
"""Test Unafold stdout input as lines"""
u = hybrid_ss_min(InputHandler='_input_as_lines')
exp = '\n'.join(unafold_stdout)
res = u(self.input)
obs = res['StdOut'].read()
self.assertEqual(obs, exp)
self.assertEqual(res['ExitStatus'], 0)
res.cleanUp()
def test_stdout_input_as_lines(self):
"""Test Unafold stdout input as lines"""
u = hybrid_ss_min(InputHandler='_input_as_lines')
exp = '\n'.join(unafold_stdout)
res = u(self.input)
obs = res['StdOut'].read()
self.assertEqual(obs,exp)
self.assertEqual(res['ExitStatus'],0)
res.cleanUp()
def test_get_result_path(self):
"""Tests unafold result path"""
u = hybrid_ss_min(InputHandler="_input_as_lines")
res = u(self.input)
self.assertEqualItems(res.keys(), ["StdOut", "StdErr", "ExitStatus", "ct", "dG", "run", "plot_37", "ext_37"])
self.assertEqual(res["ExitStatus"], 0)
assert res["ct"] is not None
assert res["dG"] is not None
assert res["run"] is not None
assert res["plot_37"] is not None
assert res["ext_37"] is not None
res.cleanUp()
def test_get_result_path(self):
"""Tests unafold result path"""
u = hybrid_ss_min(InputHandler='_input_as_lines')
res = u(self.input)
self.assertEqualItems(res.keys(),['StdOut','StdErr','ExitStatus',\
'ct','dG','run','plot_37','ext_37'])
self.assertEqual(res['ExitStatus'], 0)
assert res['ct'] is not None
assert res['dG'] is not None
assert res['run'] is not None
assert res['plot_37'] is not None
assert res['ext_37'] is not None
res.cleanUp()
def test_get_result_path(self):
"""Tests unafold result path"""
u = hybrid_ss_min(InputHandler='_input_as_lines')
res = u(self.input)
self.assertEqualItems(res.keys(),['StdOut','StdErr','ExitStatus',\
'ct','dG','run','plot_37','ext_37'])
self.assertEqual(res['ExitStatus'],0)
assert res['ct'] is not None
assert res['dG'] is not None
assert res['run'] is not None
assert res['plot_37'] is not None
assert res['ext_37'] is not None
res.cleanUp()
def test_stdout_input_as_string(self):
"""Test Unafold stdout input as string"""
u = hybrid_ss_min()
exp = '\n'.join(unafold_stdout)
f = open('/tmp/single.fasta', 'w')
f.write('\n'.join(self.input))
f.close()
res = u('/tmp/single.fasta')
obs = res['StdOut'].read()
self.assertEqual(obs, exp)
self.assertEqual(res['ExitStatus'], 0)
res.cleanUp()
remove('/tmp/single.fasta')
def test_stdout_input_as_string(self):
"""Test Unafold stdout input as string"""
u = hybrid_ss_min()
exp = "\n".join(unafold_stdout)
f = open("/tmp/single.fasta", "w")
f.write("\n".join(self.input))
f.close()
res = u("/tmp/single.fasta")
obs = res["StdOut"].read()
self.assertEqual(obs, exp)
self.assertEqual(res["ExitStatus"], 0)
res.cleanUp()
remove("/tmp/single.fasta")
def test_stdout_input_as_string(self):
"""Test Unafold stdout input as string"""
u = hybrid_ss_min()
exp = '\n'.join(unafold_stdout)
f = open('/tmp/single.fasta','w')
f.write('\n'.join(self.input))
f.close()
res = u('/tmp/single.fasta')
obs = res['StdOut'].read()
self.assertEqual(obs,exp)
self.assertEqual(res['ExitStatus'],0)
res.cleanUp()
remove('/tmp/single.fasta')