def test_len(self):
"""Bitvector len should match initialized length"""
self.assertEqual(len(Bitvector()), 0)
self.assertEqual(len(Bitvector('010')), 3)
self.assertEqual(len(Bitvector(1024, 5)), 5)
self.assertEqual(len(Bitvector(1024, 0)), 0)
self.assertEqual(len(Bitvector('1' * 1000)), 1000)
def test_thaw(self):
"""Bitvector thaw should return mutable bitvector with same data"""
b = Bitvector('111')
c = b.thaw()
self.assertEqual(c, Bitvector('111'))
c[1] = 0
self.assertEqual(c, Bitvector('101'))
self.assertNotEqual(Bitvector('111'), Bitvector('101'))
def test_str(self):
"""Bitvector str should match expected results"""
vecs = [Bitvector(i, 0) for i in [0, 1, 2, 7, 8, 1024, 814715L]]
for v in vecs:
self.assertEqual(str(v), '')
vecs = [
Bitvector(i, 1) for i in [0, 1, 2, 7, 8, 1024, 814715L, '1' * 50]
]
def test_type(self):
"""VectorFromMatches should return correct type of vector"""
v = VectorFromMatches('a', 'a')
self.assertEqual(v, Bitvector('1'))
self.assertTrue(isinstance(v, ImmutableBitvector))
v = VectorFromMatches('a', 'a', constructor=MutableBitvector)
self.assertEqual(v, Bitvector('1'))
v[0] = 0
self.assertEqual(v, Bitvector('0'))
self.assertTrue(isinstance(v, MutableBitvector))
def test_getitem(self):
"""Bitvector getitem should return states at specified position(s)"""
vec_strings = ['', '0', '1', '10', '10001101', '101' * 50]
vecs = map(Bitvector, vec_strings)
for vec_string, vec in zip(vec_strings, vecs):
for char, item in zip(vec_string, vec):
self.assertEqual(char, str(item))
#test some 2- and 3-item slices as well
vec = Bitvector('1001000101001')
self.assertEqual(vec[3:7], Bitvector('1000'))
self.assertEqual(vec[:4], Bitvector('1001'))
self.assertEqual(vec[7:], Bitvector('101001'))
self.assertEqual(vec[1:11:2], Bitvector('01011'))
def test_xor(self):
"""Bitvector A^B should return 0 for each identical position in A and B"""
results = [
['', '', '', '', '', '', ''], #'' xor x
['', '0', '1', '0', '0', '1', '1'], #'0' xor x
['', '1', '0', '1', '1', '0', '0'], #'1' xor x
['', '0', '1', '00', '01', '10', '11'], #'00' xor x
['', '0', '1', '01', '00', '11', '10'], #'01' xor x
['', '1', '0', '10', '11', '00', '01'], #'10' xor x
['', '1', '0', '11', '10', '01', '00'], #'11' xor x
]
vectors = self.vectors
for first_pos, first in enumerate(vectors):
for second_pos, second in enumerate(vectors):
self.assertEqual(str(first ^ second),
results[first_pos][second_pos])
#test chaining
expected = Bitvector('0110')
observed = Bitvector('1111') ^ Bitvector('0110') ^ Bitvector('1111')
#test long
self.assertEqual(Bitvector('11'*50) ^ Bitvector('01'*50), \
Bitvector('10'*50))
def test_str(self):
"""Bitvector str should match expected results"""
vecs = [Bitvector(i, 0) for i in [0, 1, 2, 7, 8, 1024, 814715]]
for v in vecs:
self.assertEqual(str(v), '')
vecs = [
Bitvector(i, 1) for i in [0, 1, 2, 7, 8, 1024, 814715, '1' * 50]
]
single_results = list('01010011')
for exp, vec in zip(single_results, vecs):
self.assertEqual(str(vec), exp)
vecs = [
Bitvector(i, 3) for i in [0, 1, 2, 7, 8, 1024, 814715, '1' * 50]
]
three_results = [
'000', '001', '010', '111', '000', '000', '011', '111'
]
for exp, vec in zip(three_results, vecs):
self.assertEqual(str(vec), exp)
#should pad or truncate to the correct length
self.assertEqual(str(Bitvector(814715, 20)), '11000110111001111011')
self.assertEqual(str(Bitvector(814715, 10)), '1001111011')
self.assertEqual(str(Bitvector(8, 10)), '0000001000')
self.assertEqual(str(Bitvector('1' * 50)), '1' * 50)
def test_and(self):
"""Bitvector A&B should return 0 for each position that is 0 in A and B"""
results = [
['', '', '', '', '', '', ''], #'' and x
['', '0', '0', '0', '0', '0', '0'], #'0' and x
['', '0', '1', '0', '0', '1', '1'], #'1' and x
['', '0', '0', '00', '00', '00', '00'], #'00' and x
['', '0', '0', '00', '01', '00', '01'], #'01' and x
['', '0', '1', '00', '00', '10', '10'], #'10' and x
['', '0', '1', '00', '01', '10', '11'], #'11' and x
]
vectors = self.vectors
for first_pos, first in enumerate(vectors):
for second_pos, second in enumerate(vectors):
self.assertEqual(str(first & second),
results[first_pos][second_pos])
#test chaining
expected = Bitvector('0110')
observed = Bitvector('1110') & Bitvector('1111') & Bitvector('0111')
self.assertEqual(observed, expected)
#test long
self.assertEqual(Bitvector('10'*50) & Bitvector('11'*50), \
Bitvector('10'*50))
def test_or(self):
"""Bitvector A|B should return 1 for each position that is 1 in A or B"""
results = [
['', '', '', '', '', '', ''], #'' or x
['', '0', '1', '0', '0', '1', '1'], #'0' or x
['', '1', '1', '1', '1', '1', '1'], #'1' or x
['', '0', '1', '00', '01', '10', '11'], #'00' or x
['', '0', '1', '01', '01', '11', '11'], #'01' or x
['', '1', '1', '10', '11', '10', '11'], #'10' or x
['', '1', '1', '11', '11', '11', '11'], #'11' or x
]
vectors = self.vectors
for first_pos, first in enumerate(vectors):
for second_pos, second in enumerate(vectors):
self.assertEqual(str(first | second),
results[first_pos][second_pos])
#test chaining
expected = Bitvector('1110')
observed = Bitvector('1000') | Bitvector('0100') | Bitvector('0110')
self.assertEqual(observed, expected)
#test long
self.assertEqual(Bitvector('10'*50) | Bitvector('01'*50), \
Bitvector('11'*50))
def test_init(self):
"""VectorFromRuns should return vector with 1 where string is ucase"""
empty = []
empty_run = [[5, 0]]
one_run = [[5, 3]]
two_runs = [[5, 1], [11, 4]]
overlap = [[5, 3], [6, 4]]
tests = [empty, empty_run, one_run, two_runs, overlap]
exp_15 = [
'0' * 15, '0' * 15, '0' * 5 + '1' * 3 + 7 * '0',
'0' * 5 + '1' + '0' * 5 + '1' * 4, '0' * 5 + '1' * 5 + '0' * 5
]
for test, exp in zip(tests, exp_15):
self.assertEqual(VectorFromRuns(test, 15), Bitvector(exp))
self.assertEqual(VectorFromRuns(test, 0), Bitvector(''))
#should fail if vec too short
self.assertRaises(IndexError, VectorFromRuns, two_runs, 5)
def test_init(self):
"""VectorFromSpans hould return vector with 1 in correct spans"""
empty = []
empty_run = [[5, 5]]
one_run = [[5, 8]]
two_runs = [[5, 6], [11, 15]]
overlap = [[5, 8], [6, 10]]
tests = [empty, empty_run, one_run, two_runs, overlap]
exp_15 = [
'0' * 15, '0' * 15, '0' * 5 + '1' * 3 + 7 * '0',
'0' * 5 + '1' + '0' * 5 + '1' * 4, '0' * 5 + '1' * 5 + '0' * 5
]
for test, exp in zip(tests, exp_15):
self.assertEqual(VectorFromSpans(test, 15), Bitvector(exp))
self.assertEqual(VectorFromSpans(test, 0), Bitvector(''))
#should fail if vec too short
self.assertRaises(IndexError, VectorFromSpans, two_runs, 5)
def test_thaw(self):
"""Bitvector thaw should return mutable bitvector with same data"""
b = Bitvector('111')
c = b.thaw()
self.assertEqual(c, Bitvector('111'))
c[1] = 0
self.assertEqual(c, Bitvector('101'))
self.assertNotEqual(Bitvector('111'), Bitvector('101'))
def test_invert(self):
"""Bitvector ~A should return a vector exchanging 1's for 0's"""
results = map(Bitvector, ['', '1', '0', '11', '10', '01', '00'])
for data, result in zip(self.vectors, results):
self.assertEqual(~data, result)
if len(data):
self.assertNotEqual(data, result)
else:
self.assertEqual(data, result)
#test chaining
self.assertEqual(~~data,
data) #inverting twice should give original
self.assertEqual(~~~data, ~data)
#test long
self.assertEqual(~Bitvector('10' * 50), Bitvector('01' * 50))
self.assertEqual(str(~Bitvector('10' * 50)),
str(Bitvector('01' * 50)))
def test_init(self):
"""VectorFromPositions should return correct vector"""
empty = []
first = [0]
fifth = [4]
several = [1, 4, 6, 9]
tests = [empty, first, fifth, several]
exp_0 = [''] * 4
for test, exp in zip(tests, exp_0):
self.assertEqual(VectorFromPositions(test, 0), Bitvector(exp))
exp_5 = ['00000', '10000', '00001']
for test, exp in zip(tests, exp_5):
self.assertEqual(VectorFromPositions(test, 5), Bitvector(exp))
exp_10 = ['0' * 10, '1' + '0' * 9, '00001' + '0' * 5, '0100101001']
for test, exp in zip(tests, exp_10):
self.assertEqual(VectorFromPositions(test, 10), Bitvector(exp))
self.assertRaises(IndexError, VectorFromPositions, [10], 5)
def test_init(self):
"""VectorFromCases should return vector with 1 where string is ucase"""
valid_strings = ['', 'a', 'X', 'aBc', 'Acb', 'abC', 'AAA', 'aaa', '@']
results = ['', '0', '1', '010', '100', '001', '111', '000', '0']
for data, result in zip(valid_strings, results):
self.assertEqual(VectorFromCases(data), LongBitvector(result))
self.assertTrue(isinstance(VectorFromCases(data), LongBitvector))
self.assertEqual(VectorFromCases(data, ShortBitvector), \
ShortBitvector(result))
self.assertTrue(isinstance(VectorFromCases(data, ShortBitvector), \
ShortBitvector))
v = VectorFromCases('aBC')
self.assertTrue(isinstance(v, ImmutableBitvector))
w = VectorFromCases('aBC', MutableBitvector)
self.assertTrue(isinstance(w, MutableBitvector))
self.assertEqual(w, Bitvector('011'))
w[0] = 1
self.assertEqual(w, Bitvector('111'))
def test_freeze(self):
"""MutableBitvector freeze should return immutable bv with same data"""
b = MutableBitvector('111')
b[1] = 0
c = b.freeze()
self.assertSameObj(c, b._handler)
self.assertEqual(c, Bitvector('101'))
try:
c[1] = 1
except TypeError:
pass
else:
raise AssertionError, \
"MutableBitvector.freeze() returned mutable object."
def test_init(self):
"""Bitvector init should give expected results."""
self.assertEqual(Bitvector(), 0)
self.assertEqual(Bitvector('1001'), 9)
self.assertEqual(Bitvector(['1', '0', '0', '0']), 8)
self.assertEqual(Bitvector([]), 0)
#if passing in non-sequence, must specify length
self.assertRaises(TypeError, Bitvector, 1024)
self.assertEqual(Bitvector(1024, 10), 1024)
bv = Bitvector(10, 3)
self.assertEqual(bv, 10)
self.assertEqual(len(bv), 3)
self.assertEqual(len(Bitvector('1' * 1000)), 1000)
#check that initializing a bv from itself preserves length
bv2 = Bitvector(bv)
self.assertEqual(bv2, 10)
self.assertEqual(len(bv2), 3)
def test_setitem(self):
"""MutableBitvector setitem should change positions correctly"""
self.assertRaises(IndexError, MutableBitvector().__setitem__, 1, 1)
vec_strings = ['0', '1', '10', '10001101', '101' * 50]
vecs = map(MutableBitvector, vec_strings)
results_1 = ['1', '1', '10', '10001101', '101' * 50]
for vec, res in zip(vecs, results_1):
vec[0] = 1
self.assertEqual(vec, Bitvector(res))
results_0 = ['0', '0', '10', '10001100', '101' * 49 + '100']
for vec, res in zip(vecs, results_0):
vec[-1] = 0
self.assertEqual(vec, Bitvector(res))
vec = MutableBitvector('1001000101001')
vec[3:7] = '1111'
self.assertEqual(vec, Bitvector('1001111101001'))
vec[:4] = '0101'
self.assertEqual(vec, Bitvector('0101111101001'))
vec[7:] = '000111'
self.assertEqual(vec, Bitvector('0101111000111'))
vec[1:11:2] = '11011'
self.assertEqual(vec, Bitvector('0101101101111'))
def test_str(self):
"""Bitvector str should match expected results"""
vecs = [Bitvector(i, 0) for i in [0, 1, 2, 7, 8, 1024, 814715L]]
for v in vecs:
self.assertEqual(str(v), '')
vecs = [
Bitvector(i, 1) for i in [0, 1, 2, 7, 8, 1024, 814715L, '1' * 50]
]
single_results = list('01010011')
for exp, vec in zip(single_results, vecs):
self.assertEqual(str(vec), exp)
vecs = [
Bitvector(i, 3) for i in [0, 1, 2, 7, 8, 1024, 814715L, '1' * 50]
]
three_results = [
'000', '001', '010', '111', '000', '000', '011', '111'
]
for exp, vec in zip(three_results, vecs):
self.assertEqual(str(vec), exp)
#should pad or truncate to the correct length
self.assertEqual(str(Bitvector(814715, 20)), '11000110111001111011')
self.assertEqual(str(Bitvector(814715, 10)), '1001111011')
self.assertEqual(str(Bitvector(8, 10)), '0000001000')
self.assertEqual(str(Bitvector('1' * 50)), '1' * 50)
def test_or(self):
"""Bitvector A|B should return 1 for each position that is 1 in A or B"""
def test_freeze(self):
"""Bitvector freeze should return same object"""
v = Bitvector()
self.assertSameObj(v.freeze(), v)
def test_repr(self):
"""Bitvector repr should look like a normal object"""
v = Bitvector(3, 10)
v_id = str(hex(id(v)))
expected = '<cogent.core.bitvector.ShortBitvector object at'
self.assertTrue( ` v `.startswith(expected))
def test_freeze(self):
"""Bitvector freeze should return same object"""
v = Bitvector()
self.assertSameObj(v.freeze(), v)
