def makeQdDefn(self, word_probs, mprobs_matrix, rate_params):
"""Diagonalized Q, ie: rate matrix prepared for exponentiation"""
Q = CalcDefn(self.calcQ, name='Q')(word_probs, mprobs_matrix, *rate_params)
expm = NonParamDefn('expm')
exp = ExpDefn(expm)
Qd = CallDefn(exp, Q, name='Qd')
return Qd
def makeContinuousPsubDefn(self, word_probs, mprobs_matrix, distance,
rate_params):
Qd = self.makeQdDefn(word_probs, mprobs_matrix, rate_params)
P = CallDefn(Qd, distance, name='psubs')
return P