"incidence": 1.0,
"date": {
"earliest": "1950-01-01",
"latest": "index_date"
},
},
),
stp=patients.registered_practice_as_of(
"index_date",
returning="stp_code",
return_expectations={
"rate": "universal",
"category": {
"ratios": {
"STP1": 1.0
}
},
},
),
)
measures = [
Measure(
id="liver_disease_by_stp",
numerator="has_chronic_liver_disease",
denominator="population",
group_by="stp",
small_number_suppression=True,
),
]
stp = patients.registered_practice_as_of("index_date",
returning="stp_code",
return_expectations={
"category": {"ratios": {"STP1": 0.5, "STP2": 0.5}},
},),
first_dose=patients.with_these_clinical_events(first_dose_code,
returning="binary_flag",
between = ["index_date", "index_date + 1 month"],
return_expectations = { "incidence": 0.4 }
),
second_dose=patients.with_these_clinical_events(second_dose_code,
returning="binary_flag",
between = ["index_date", "index_date + 1 month"],
return_expectations = { "incidence": 0.4 }
),
)
measures = [
Measure(id="first_dose_stp",
numerator="first_dose",
denominator="population",
group_by = ["stp", "age_group"]),
Measure(id="second_dose_stp",
numerator="second_dose",
denominator="population",
group_by = ["stp", "age_group"]),
]
ketoacidosis_ons=patients.with_these_codes_on_death_certificate(
ketoacidosis_codes,
between=["index_date", "last_day_of_month(index_date)"],
return_expectations={"incidence": 0.05},
),
),
died=patients.died_from_any_cause(
between=["index_date", "last_day_of_month(index_date)"],
return_expectations={"incidence": 0.1},
),
)
measures = [
Measure(
id="died_rate",
numerator="died",
denominator="population",
group_by=["covid_hospitalisation"],
),
Measure(
id="DVT_rate",
numerator="DVT",
denominator="population",
group_by=["covid_hospitalisation"],
),
Measure(
id="PE_rate",
numerator="PE",
denominator="population",
group_by=["covid_hospitalisation"],
),
Measure(
return_expectations={"incidence": 0.4}),
vl_first_dose=patients.with_these_clinical_events(
vl_first_dose_code,
returning="binary_flag",
between=["index_date", "index_date + 1 month"],
return_expectations={"incidence": 0.4}),
vl_second_dose=patients.with_these_clinical_events(
vl_second_dose_code,
returning="binary_flag",
between=["index_date", "index_date + 1 month"],
return_expectations={"incidence": 0.4}),
)
measures = [
Measure(id="first_dose_stp",
numerator="first_dose",
denominator="population",
group_by=["stp", "age_group"]),
Measure(id="second_dose_stp",
numerator="second_dose",
denominator="population",
group_by=["stp", "age_group"]),
Measure(id="vl_second_dose_stp",
numerator="vl_second_dose",
denominator="population",
group_by=["stp", "age_group"]),
Measure(id="vl_first_dose_stp",
numerator="vl_first_dose",
denominator="population",
group_by=["stp", "age_group"]),
Measure(id="pf_second_dose_stp",
numerator="pf_second_dose",
returning="number_of_matches_in_period",
return_expectations={
"incidence": 0.6,
"int": {
"distribution": "normal",
"mean": 8,
"stddev": 2
},
},
),
)
measures = [
Measure(
id="liver_disease",
numerator="has_chronic_liver_disease",
denominator="population",
),
Measure(
id="liver_disease_by_stp",
numerator="has_chronic_liver_disease",
denominator="population",
group_by="stp",
),
Measure(
id="liver_disease_by_stp_and_sex",
numerator="has_chronic_liver_disease",
denominator="population",
group_by=["stp", "sex"],
),
]
codes_inr,
returning="number_of_episodes",
between=["index_date", "index_date + 1 month"],
return_expectations={
"int": {
"distribution": "normal",
"mean": 3,
"stddev": 0.5
}
},
),
)
measures = [
Measure(id="cholesterol_practice",
numerator="cholesterol",
denominator="population",
group_by="practice"),
Measure(id="cholesterol_stp",
numerator="cholesterol",
denominator="population",
group_by="stp"),
Measure(id="inr_practice",
numerator="inr",
denominator="population",
group_by="practice"),
Measure(id="inr_stp",
numerator="inr",
denominator="population",
group_by="stp"),
]
