def show(self, fmt='S'):
output = []
output.append(cl.g + 'Topology, # of residue: %d' %
(len(self.getreses())) + cl.n + '\n')
output.append(cl.g + '-' * 80 + cl.n + '\n')
if self.norm:
reses = reduce(add, self.norm.values())
reses.sort(key=lambda x: (x.cat, x.name))
output.append('>>> Normal residues, %d in total\n' % len(reses))
for res in reses:
output += res.show(fmt, disp=False)
if self.nter:
reses = reduce(add, self.nter.values())
reses.sort(key=lambda x: x.name)
output.append('>>> N-terminal residues, %d in total\n' %
len(reses))
for res in reses:
output += res.show(fmt, disp=False)
if self.cter:
reses = reduce(add, self.cter.values())
reses.sort(key=lambda x: x.name)
output.append('>>> C-terminal residues, %d in total\n' %
len(reses))
for res in reses:
output += res.show(fmt, disp=False)
pager(output)
def show(self, fmt='S'):
output = []
output.append(cl.y + 'PDB file, # of model: %d' % len(self.mds) +
cl.n + '\n')
output.append(cl.y + '+' * 80 + cl.n + '\n')
for md in self.mds:
output += md.show(fmt, disp=False)
pager(output)
def show(self, fmt='S', disp=True):
output = []
output.append(('Model %d,' % self.mdid if self.mdid else 'Mol,') +
' # of segment: %d\n' % len(self.segs))
output.append('=' * 80 + '\n')
for seg in self.segs:
output += seg.show(fmt, disp=False)
if disp:
pager(output)
else:
return output
def show(self, fmt='S', disp=True):
output = ['']
output.append(cl.g + 'Segment ' + self.sgid +
', # of residue: %d' % len(self.reses) + cl.n + '\n')
output.append(cl.g + '-' * 80 + cl.n + '\n')
if not self.reses:
output.append('No residue exists!\n')
else:
for res in self.reses:
output += res.show(fmt, disp=False)
if disp:
pager(output)
else:
return output