def makeRunScript(scriptFile,
workflowModulePath,
workflowClassName,
primaryConfigSection,
configSections,
pythonBin=None):
"""
This function generates the python workflow runscript
The auto-generated python script presents the user with options to
run and/or continue their workflow, and reads all workflow
configuration info from an ini file.
scriptFile -- file name of the runscript to create
workflowModulePath -- the python module containing the workflow class
workflowClassName -- the workflow class name
primaryConfigSection -- the section used to create the primary workflow parameter object
configSections -- a hash or hashes representing all configuration info
@param pythonBin: optionally specify a custom python interpreter for the script she-bang
"""
assert os.path.isdir(os.path.dirname(scriptFile))
assert os.path.isfile(workflowModulePath)
workflowModulePath = os.path.abspath(workflowModulePath)
workflowModuleDir = os.path.dirname(workflowModulePath)
workflowModuleName = os.path.basename(workflowModulePath)
pyExt = ".py"
if workflowModuleName.endswith(pyExt):
workflowModuleName = workflowModuleName[:-len(pyExt)]
# dump inisections to a file
pickleConfigFile = scriptFile + ".config.pickle"
pickleConfigSections(pickleConfigFile, configSections)
sfp = open(scriptFile, "w")
if pythonBin is None:
pythonBin = "/usr/bin/env python2"
sfp.write(runScript1 % (pythonBin, " ".join(
sys.argv), workflowModuleDir, workflowModuleName, workflowClassName))
sfp.write('\n')
sfp.write(runScript2)
sfp.write('\n')
sfp.write(runScript3)
sfp.write('\n')
sfp.write('main(r"%s","%s",%s)\n' %
(pickleConfigFile, primaryConfigSection, workflowClassName))
sfp.write('\n')
sfp.close()
os.chmod(scriptFile, 0755)
def makeRunScript(scriptFile, workflowModulePath, workflowClassName, primaryConfigSection, configSections, pythonBin=None) :
"""
This function generates the python workflow runscript
The auto-generated python script presents the user with options to
run and/or continue their workflow, and reads all workflow
configuration info from an ini file.
scriptFile -- file name of the runscript to create
workflowModulePath -- the python module containing the workflow class
workflowClassName -- the workflow class name
primaryConfigSection -- the section used to create the primary workflow parameter object
configSections -- a hash or hashes representing all configuration info
@param pythonBin: optionally specify a custom python interpreter for the script she-bang
"""
assert os.path.isdir(os.path.dirname(scriptFile))
assert os.path.isfile(workflowModulePath)
workflowModulePath=os.path.abspath(workflowModulePath)
workflowModuleDir=os.path.dirname(workflowModulePath)
workflowModuleName=os.path.basename(workflowModulePath)
pyExt=".py"
if workflowModuleName.endswith(pyExt) :
workflowModuleName=workflowModuleName[:-len(pyExt)]
# dump inisections to a file
pickleConfigFile=scriptFile+".config.pickle"
pickleConfigSections(pickleConfigFile,configSections)
sfp=open(scriptFile,"w")
if pythonBin is None :
pythonBin="/usr/bin/env python"
sfp.write(runScript1 % (pythonBin, " ".join(sys.argv),workflowModuleDir,workflowModuleName,workflowClassName))
sfp.write('\n')
sfp.write(runScript2)
sfp.write('\n')
sfp.write(runScript3)
sfp.write('\n')
sfp.write('main(r"%s","%s",%s)\n' % (pickleConfigFile, primaryConfigSection, workflowClassName))
sfp.write('\n')
sfp.close()
os.chmod(scriptFile,0755)