def test_default_app(self):
run = self.build_run()
handler = runcontainer.Command()
expected_command = [
'singularity', 'run', '--contain', '--cleanenv', '-B',
'/tmp/box23/input:/mnt/input,/tmp/box23/output:/mnt/output',
'/tmp/foo.simg', '/mnt/input/in_csv', '/mnt/output/out_csv'
]
command = handler.build_command(run)
self.assertListEqual(expected_command, command)
def test_build_dataset_name(self):
run = ContainerRun(id=42)
handler = runcontainer.Command()
scenarios = [('example_csv', 'example_42.csv'),
('example_tar_gz', 'example_42.tar.gz'),
('csv', '42.csv'), ('_csv', '_42.csv'), ('_', '__42'),
('no_extension', 'no_extension_42')]
for argument_name, expected_dataset_name in scenarios:
dataset_name = handler.build_dataset_name(run, argument_name)
self.assertEqual(expected_dataset_name, dataset_name)