def test_metadata_only(update_ffmeta_metaonly_data2, tibanna_env):
update_ffmeta_metaonly_data2.update(tibanna_env)
with mock.patch('core.pony_utils.patch_metadata') as mock_request:
ret = handler(update_ffmeta_metaonly_data2, None)
# once for patch pf once for workflow run
mock_request.call_count == 2
assert ret
def test_mcool_updates_fourfront_higlass(update_ffmeta_mcool, tibanna_env):
update_ffmeta_mcool.update(tibanna_env)
with mock.patch('core.pony_utils.patch_metadata'):
with mock.patch('requests.post') as mock_request:
ret = handler(update_ffmeta_mcool, None)
mock_request.assert_called_once()
assert ret
def test_update_ffmeta_awsem_e2e(update_ffmeta_event_data, tibanna_env):
update_ffmeta_event_data.update(tibanna_env)
ret = handler(update_ffmeta_event_data, None)
assert json.dumps(ret)
assert 'awsem_postrun_json' in ret['ff_meta']
assert ret['ff_meta'][
'awsem_postrun_json'] == 'https://s3.amazonaws.com/tibanna-output/8fRIlIfwRNDT.postrun.json'
def test_update_ffmeta_awsem_extra_md5(update_ffmeta_hicbam, tibanna_env):
update_ffmeta_hicbam.update(tibanna_env)
ret = handler(update_ffmeta_hicbam, None)
assert json.dumps(ret)
assert 'awsem_postrun_json' in ret['ff_meta']
assert ret['ff_meta']['awsem_postrun_json'] == 'https://s3.amazonaws.com/tibanna-output/x2w1uKSsEvT0.postrun.json'
assert 'md5sum' in ret['pf_meta'][1]['extra_files'][0]
assert 'file_size' in ret['pf_meta'][1]['extra_files'][0]