def test_logging_collection_with_a_single_error():
logging = LoggingCollection()
logging.add_error("TYPE 3", "This is a testing message")
aggregator = logging.aggregator_types["TYPE 3"]
assert aggregator.count_errors == 1
assert aggregator.max_errors == 5
assert aggregator.get_report_message() == "Total number of 'Only root sample id' errors (TYPE 3): 1"
exptd_msgs = (
"WARNING: Sample rows that have Root Sample ID value but no other information. (TYPE 3) "
"(e.g. This is a testing message)"
)
assert aggregator.get_message() == exptd_msgs
assert logging.get_aggregate_messages() == [exptd_msgs]
assert logging.get_count_of_all_errors_and_criticals() == 0
assert logging.get_aggregate_total_messages() == ["Total number of 'Only root sample id' errors (TYPE 3): 1"]
def test_logging_collection_with_multiple_errors():
logging = LoggingCollection()
logging.add_error("TYPE 3", "This is the first type 3 message")
logging.add_error("TYPE 1", "This is the first type 1 message")
logging.add_error("TYPE 2", "This is the first type 2 message")
logging.add_error("TYPE 3", "This is the second type 3 message")
logging.add_error("TYPE 2", "This is the second type 2 message")
logging.add_error("TYPE 4", "This is the first type 4 message")
logging.add_error("TYPE 1", "This is the first type 1 message")
logging.add_error("TYPE 3", "This is the third type 3 message")
aggregator_type_1 = logging.aggregator_types["TYPE 1"]
aggregator_type_2 = logging.aggregator_types["TYPE 2"]
aggregator_type_3 = logging.aggregator_types["TYPE 3"]
aggregator_type_4 = logging.aggregator_types["TYPE 4"]
assert aggregator_type_1.count_errors == 2
assert aggregator_type_2.count_errors == 2
assert aggregator_type_3.count_errors == 3
assert aggregator_type_4.count_errors == 1
exptd_msgs = [
"DEBUG: Blank rows in files. (TYPE 1)",
(
"CRITICAL: Files where we do not have the expected main column headers of Root Sample "
"ID, RNA ID and Result. (TYPE 2)"
),
(
"WARNING: Sample rows that have Root Sample ID value but no other information. "
"(TYPE 3) (e.g. This is the first type 3 message) (e.g. This is the second type 3 "
"message) (e.g. This is the third type 3 message)"
),
(
"ERROR: Sample rows that have Root Sample ID and Result values but no RNA ID (no plate "
"barcode). (TYPE 4) (e.g. This is the first type 4 message)"
),
]
assert logging.get_aggregate_messages() == exptd_msgs
assert logging.get_count_of_all_errors_and_criticals() == 3
exptd_report_msgs = [
"Total number of 'Blank row' errors (TYPE 1): 2",
"Total number of 'Missing header column' errors (TYPE 2): 2",
"Total number of 'Only root sample id' errors (TYPE 3): 3",
"Total number of 'No plate barcode' errors (TYPE 4): 1",
]
assert logging.get_aggregate_total_messages() == exptd_report_msgs