def synch_with_protocol_builder_if_enabled(user):
"""Assures that the studies we have locally for the given user are
in sync with the studies available in protocol builder. """
if ProtocolBuilderService.is_enabled():
app.logger.info("The Protocol Builder is enabled. app.config['PB_ENABLED'] = " +
str(app.config['PB_ENABLED']))
# Get studies matching this user from Protocol Builder
pb_studies: List[ProtocolBuilderStudy] = ProtocolBuilderService.get_studies(user.uid)
# Get studies from the database
db_studies = session.query(StudyModel).filter_by(user_uid=user.uid).all()
# Update all studies from the protocol builder, create new studies as needed.
# Futher assures that every active study (that does exist in the protocol builder)
# has a reference to every available workflow (though some may not have started yet)
for pb_study in pb_studies:
db_study = next((s for s in db_studies if s.id == pb_study.STUDYID), None)
if not db_study:
db_study = StudyModel(id=pb_study.STUDYID)
session.add(db_study)
db_studies.append(db_study)
db_study.update_from_protocol_builder(pb_study)
StudyService._add_all_workflow_specs_to_study(db_study)
# Mark studies as inactive that are no longer in Protocol Builder
for study in db_studies:
pb_study = next((pbs for pbs in pb_studies if pbs.STUDYID == study.id), None)
if not pb_study:
study.protocol_builder_status = ProtocolBuilderStatus.ABANDONED
db.session.commit()
def synch_with_protocol_builder_if_enabled(user):
"""Assures that the studies we have locally for the given user are
in sync with the studies available in protocol builder. """
if ProtocolBuilderService.is_enabled():
app.logger.info(
"The Protocol Builder is enabled. app.config['PB_ENABLED'] = "
+ str(app.config['PB_ENABLED']))
# Get studies matching this user from Protocol Builder
pb_studies: List[
ProtocolBuilderCreatorStudy] = ProtocolBuilderService.get_studies(
user.uid)
# Get studies from the database
db_studies = session.query(StudyModel).filter_by(
user_uid=user.uid).all()
# Update all studies from the protocol builder, create new studies as needed.
# Further assures that every active study (that does exist in the protocol builder)
# has a reference to every available workflow (though some may not have started yet)
for pb_study in pb_studies:
new_status = None
new_progress_status = None
db_study = next(
(s for s in db_studies if s.id == pb_study.STUDYID), None)
if not db_study:
db_study = StudyModel(id=pb_study.STUDYID)
db_study.status = None # Force a new sa
new_status = StudyStatus.in_progress
new_progress_status = ProgressStatus.in_progress
session.add(db_study)
db_studies.append(db_study)
db_study.update_from_protocol_builder(pb_study, user.uid)
StudyService._add_all_workflow_specs_to_study(db_study)
# If there is a new automatic status change and there isn't a manual change in place, record it.
if new_status and db_study.status != StudyStatus.hold:
db_study.status = new_status
# make sure status is `in_progress`, before processing new automatic progress_status.
if new_progress_status and db_study.status == StudyStatus.in_progress:
db_study.progress_status = new_progress_status
StudyService.add_study_update_event(
db_study,
status=new_status,
event_type=StudyEventType.automatic)
# Mark studies as inactive that are no longer in Protocol Builder
for study in db_studies:
pb_study = next(
(pbs for pbs in pb_studies if pbs.STUDYID == study.id),
None)
if not pb_study and study.status != StudyStatus.abandoned:
study.status = StudyStatus.abandoned
StudyService.add_study_update_event(
study,
status=StudyStatus.abandoned,
event_type=StudyEventType.automatic)
db.session.commit()