def test009_openFileCan2(self):
from dnaSequencing import fileToList
filename = createDataFiles.fullPath('can2.txt')
tar2_exists = isfile(filename)
self.assertTrue(
tar2_exists,
'Could not find file: "can2.txt", did you move or delete it?')
candidate2_list = [
'CCACGGGAATCCATAGTCAGAAATAGTATC', 'ACGACCGTTAACCACATTACCCCGTGGTCG',
'ACCCCTAGCCGGCCGATAGAGTGTAAGGAT', 'CGTCGACAGACCACGTTATTTCATTCGGCG',
'CCCTAGCCGGCCGATAGAGTGTAAGGATAG', 'TATGAACTTCGGCGGGTACATATGGACTAT',
'AGTCAGTGTAAGGTTAACTCCGCATTAGAA', 'AGGCTATGCGCAAGAAAAGCCATACTTCTT',
'CTGTCTTCGCCGGGCTCTATTACGGTCGCT', 'AGGGCCTGGAGACAGTCAGTGTAAGGTTAA',
'AACGGAGACGCTTTGCCGTACGACTGACCC', 'CACGGTTATGGCTTCTAGCGGTCTTCACCC',
'AGGCGTCCCTCCTTAGAGGCCAGGTGTCCG', 'GTTTGCGTCTGGAGGATGAAGCACTATACG',
'CTGTGTATGAACTTCGGCGGGTACATATGG', 'CGGTCTTCACCCCCCCAGGCAAGTAGCTTC',
'TAATGTCCATGGTGATACCCCTAGCCGGCC', 'CACCCCCCCAGGCAAGTAGCTTCACGCTGA',
'GCGTTTCAGAGCATTAATCGGGGGCCGTGT', 'CCCGACACCGGCCTTGCAGGCTATGCGCAA',
'GACCCCAAGGGGCGATATTGCACGACCGTT', 'TCGAGCGATAATTGGTGTTCGTTACAGCGT',
'GGATAGCAGACCCCCACCTTCGTAAAACAA', 'CCCTCCTTAGAGGCCAGGTGTCCGAACTTC',
'TCAGAAATAGTATCACTCCTTATTCCGACT', 'CCCGTGTTAGGCGTCCCTCCTTAGAGGCCA',
'GTCTCTTGCGCTTAAATAATCCAGCATCGC', 'CTCCCGTCGACAGACCACGTTATTTCATTC',
'CAGACCACGTTATTTCATTCGGCGTTTCTC', 'TAGTATCACTCCTTATTCCGACTCAGAAAG',
'CGGACGACCTCTAGGATGTACTACCCTACT', 'ACCGAGAACCGCGGTTATAATTTCACATTA',
'CAGTGTAAGGTTAACTCCGCATTAGAAGCC', 'ATGGCTTCTAGCGGTCTTCACCCCCCCAGG',
'CGAGAACCGCGGTTATAATTTCACATTATT', 'GCATCGCCTAGCAAAGCAGCTTACGTTCAG',
'CAAATCTCACTAATGTCCATGGTGATACCC', 'GGGAATCCATAGTCAGAAATAGTATCACTC',
'GTTTGCGTCTGGAGGATGAAGCACTATACG'
]
self.assertListEqual(fileToList(filename), candidate2_list)
def test002_openFileTarEasy(self):
from dnaSequencing import fileToList
filename = createDataFiles.fullPath('tar_easy.txt')
tar_easy_exists = isfile(filename)
self.assertTrue(
tar_easy_exists,
'Could not find file: "tar_easy.txt", did you move or delete it?')
self.assertListEqual(fileToList(filename), ['ABCDEFG'])
def test014_emptyFile(self):
from dnaSequencing import fileToList
strings = []
filename = 'empty.txt'
filepath = createDataFiles.fullPath(filename)
createDataFiles.listToFile(strings, filename)
self.extrafiles.append(filepath)
self.assertListEqual(fileToList(filepath), strings)
def test005_openFileTar2(self):
from dnaSequencing import fileToList
filename = createDataFiles.fullPath('tar2.txt')
tar2_exists = isfile(filename)
self.assertTrue(
tar2_exists,
'Could not find file: "tar2.txt", did you move or delete it?')
self.assertListEqual(fileToList(filename),
['CATTATTATGAGGTTTCCCTCCCTAAACTT'])
def test004_openFileTar1(self):
from dnaSequencing import fileToList
filename = createDataFiles.fullPath('tar1.txt')
tar1_exists = isfile(filename)
self.assertTrue(
tar1_exists,
'Could not find file: "tar1.txt", did you move or delete it?')
self.assertListEqual(fileToList(filename),
['GTCGCGTTCAGGCGCATTAAGTTAGTCGGA'])
def test006_openFileCanEasy(self):
from dnaSequencing import fileToList
filename = createDataFiles.fullPath('can_easy.txt')
tar_easy_exists = isfile(filename)
self.assertTrue(
tar_easy_exists,
'Could not find file: "can_easy.txt", did you move or delete it?')
self.assertListEqual(
fileToList(filename),
['GHHHHHH', 'FGHHHHH', 'EFGHHHH', 'CDEFGHH', 'DEFGHHH'])
def test003_openFileTar0(self):
from dnaSequencing import fileToList
filename = createDataFiles.fullPath('tar0.txt')
tar0_exists = isfile(filename)
self.assertTrue(
tar0_exists,
'Could not find file: "tar0.txt", did you move or delete it?')
self.assertListEqual(fileToList(filename), [
'TTATAGTGATATACGTGCTTAGGTAGTGCAGAGACACAACTTATAGAGTGAGGCCAGCTCACGAGCTCTAGAAGCCCAAA'
])
def test015_extraTests(self):
from string import ascii_uppercase as letters
from random import randint, choice
from dnaSequencing import fileToList
for i in range(20):
strings = [
''.join([choice(letters) for _ in range(randint(0, 100))])
for _ in range(randint(0, 100))
]
filename = ''.join([choice(letters) for _ in range(10)]) + '.txt'
filepath = createDataFiles.fullPath(filename)
createDataFiles.listToFile(strings, filename)
self.extrafiles.append(filepath)
self.assertListEqual(fileToList(filepath), strings)
