def test_process_criterias(self):
feature = "gene"
criteria = "cand_gene_in_study,gene_in_region"
criteria_list = CriteriaManager.process_criterias(feature, criteria=None, config=None, show=True)
self.assertIn("cand_gene_in_study", criteria_list, "cand_gene_in_study in list")
self.assertIn("is_gene_in_mhc", criteria_list, "is_gene_in_mhc in list")
criteria_list = CriteriaManager.process_criterias(feature, criteria=criteria, config=None, show=True)
self.assertIn("cand_gene_in_study", criteria_list, "cand_gene_in_study in list")
self.assertNotIn("is_gene_in_mhc", criteria_list, "is_gene_in_mhc not in in list")
def handle(self, *args, **options):
criteria_manager = CriteriaManager()
feature_ = None
criteria_ = None
if 'feature' in options:
feature_ = options['feature']
if 'criteria' in options:
criteria_ = options['criteria']
if 'show' in options:
show_ = options['show']
if 'test' in options:
test_ = options['test']
if test_:
config_ = criteria_manager.get_criteria_config(ini_file='test_criteria.ini')
else:
config_ = criteria_manager.get_criteria_config(ini_file='criteria.ini')
criteria_manager.process_criterias(feature=feature_, criteria=criteria_, config=config_, show=show_, test=test_)