def write(self, outfile):
csv_file = open(outfile, 'w')
self.writer = CSVWriter(csv_file)
# Header
self.writer.write_row([
'Query', 'Name', 'Length', 'Score', 'Expect', 'QueryStart',
'QueryEnd', 'SubjectStart', 'SubjectEnd'
])
# Body
for row in self.parse():
self.writer.write_row(row)
def filterByExpect(self, outfile, threshold=1.0):
csv_file = open(outfile, 'w')
self.writer = CSVWriter(csv_file)
# Header
self.writer.write_row([
'Query', 'Name', 'Length', 'Score', 'Expect', 'QueryStart',
'QueryEnd', 'SubjectStart', 'SubjectEnd'
])
# Body
for row in self.parse():
if row[self.EXPECT_COLUMN] <= threshold:
self.writer.write_row(row)
