def correct(self):
actions = list()
backup(self.archivelist)
actions.append("Archived files %s" % self.archivelist)
for myfile in self.archivelist:
if (not myfile in self.copyfromlist) and (
not myfile in self.copytolist
): #if it is a copy-from, don't want to delete it, and if it is a copy-to, it will be either overwritted by a copy-from file, or preserved
if os.path.isfile(myfile):
os.remove(myfile)
for myfile in self.copyfromlist:
cindex = self.copyfromlist.index(myfile)
if os.path.isfile(myfile):
if os.stat(myfile).st_size > 0:
os.rename(myfile, self.copytolist[cindex])
actions.append(
"Copied file %s to %s" %
(self.copyfromlist[cindex], self.copytolist[cindex]))
else:
actions.append(
"Skipped file copy of %s to %s because %s was empty." %
(self.copyfromlist[cindex], self.copytolist[cindex],
self.copyfromlist[cindex]))
else:
actions.append(
"Skipped file copy of %s to %s because %s did not exist." %
(self.copyfromlist[cindex], self.copytolist[cindex],
self.copyfromlist[cindex]))
return {"errors": ["MAST VASP at NSW error"], "actions": actions}
def correct(self):
actions=list()
multiplier = 4
if 'mast_nodes' in self.keywords['program_keys'].keys():
currnodes = self.keywords['program_keys']['mast_nodes']
newnodes = int(currnodes) * multiplier
self.keywords['program_keys']['mast_nodes'] = newnodes
actions.append("Multiplied mast_nodes by %i to get %i" % (multiplier, newnodes))
if 'mast_processors' in self.keywords['program_keys'].keys():
currprocs = self.keywords['program_keys']['mast_processors']
newprocs = int(currprocs) * multiplier
self.keywords['program_keys']['mast_processors'] = newprocs
actions.append("Multiplied mast_processors by %i to get %i" % (multiplier, newprocs))
script_commands.write_submit_script(self.keywords)
actions.append("Wrote new submission script.")
#archive old files. But, for insufficient virtual memory, not worth
# trying to copy files, for example, CONTCAR to POSCAR, as the run
# probably did not actually run to begin with.
backup(self.archivelist)
actions.append("Archived files %s" % self.archivelist)
for fname in self.archivelist:
if os.path.isfile("%s/%s" % (self.keywords['name'],fname)):
os.remove("%s/%s" % (self.keywords['name'],fname))
return {"errors": ["MAST insufficient virtual memory error"], "actions": actions}
def correct(self):
actions = list()
multiplier = 4
if 'mast_nodes' in self.keywords['program_keys'].keys():
currnodes = self.keywords['program_keys']['mast_nodes']
newnodes = int(currnodes) * multiplier
self.keywords['program_keys']['mast_nodes'] = newnodes
actions.append("Multiplied mast_nodes by %i to get %i" %
(multiplier, newnodes))
if 'mast_processors' in self.keywords['program_keys'].keys():
currprocs = self.keywords['program_keys']['mast_processors']
newprocs = int(currprocs) * multiplier
self.keywords['program_keys']['mast_processors'] = newprocs
actions.append("Multiplied mast_processors by %i to get %i" %
(multiplier, newprocs))
script_commands.write_submit_script(self.keywords)
actions.append("Wrote new submission script.")
#archive old files. But, for insufficient virtual memory, not worth
# trying to copy files, for example, CONTCAR to POSCAR, as the run
# probably did not actually run to begin with.
backup(self.archivelist)
actions.append("Archived files %s" % self.archivelist)
for fname in self.archivelist:
if os.path.isfile("%s/%s" % (self.keywords['name'], fname)):
os.remove("%s/%s" % (self.keywords['name'], fname))
return {
"errors": ["MAST insufficient virtual memory error"],
"actions": actions
}
def correct(self):
actions=list()
backup(self.archivelist)
actions.append("Archived files %s" % self.archivelist)
for file in self.archivelist:
if (not file in self.copyfromlist) and (not file in self.copytolist): #if it is a copy-from, don't want to delete it, and if it is a copy-to, it will be either overwritted by a copy-from file, or preserved
if os.path.isfile(file):
os.remove(file)
for file in self.copyfromlist:
cindex = self.copyfromlist.index(file)
if os.path.isfile(file):
if os.stat(file).st_size > 0:
os.rename(file, self.copytolist[cindex])
actions.append("Copied file %s to %s" % (self.copyfromlist[cindex], self.copytolist[cindex]))
else:
actions.append("Skipped file copy of %s to %s because %s was empty." % (self.copyfromlist[cindex],self.copytolist[cindex],self.copyfromlist[cindex]))
else:
actions.append("Skipped file copy of %s to %s because %s did not exist." % (self.copyfromlist[cindex],self.copytolist[cindex],self.copyfromlist[cindex]))
return {"errors": ["MAST exceeded walltime error"], "actions": actions}
