def Optimize(self):
algorithm_name = self.optimization_settings["optimization_algorithm"][
"name"].GetString()
print(
"\n> =============================================================================================================="
)
print("> ",
Timer().GetTimeStamp(),
": Starting optimization using the following algorithm: ",
algorithm_name)
print(
"> ==============================================================================================================\n"
)
algorithm = algorithm_factory.CreateOptimizationAlgorithm(
self.optimization_settings, self.analyzer, self.communicator,
self.model_part_controller)
algorithm.CheckApplicability()
algorithm.InitializeOptimizationLoop()
algorithm.RunOptimizationLoop()
algorithm.FinalizeOptimizationLoop()
print(
"\n> =============================================================================================================="
)
print(
"> Finished optimization "
)
print(
"> ==============================================================================================================\n"
)
# ==============================================================================
def _WriteCurrentValuesToFile(self):
with open(self.complete_log_file_name, 'a') as csvfile:
historyWriter = csv.writer(csvfile,
delimiter=',',
quotechar='|',
quoting=csv.QUOTE_MINIMAL)
row = []
row.append("{:>4d}".format(self.current_iteration))
objective_id = self.specified_objectives[0][
"identifier"].GetString()
row.append(" {:> .5E}".format(
self.value_history[objective_id][self.current_iteration]))
row.append(" {:> .5E}".format(
self.value_history["abs_change_obj"][self.current_iteration]))
row.append(" {:> .5E}".format(
self.value_history["rel_change_obj"][self.current_iteration]))
row.append(" {:> .5E}".format(
self.value_history["norm_obj_gradient"][
self.current_iteration]))
row.append(" {:> .5E}".format(
self.value_history["step_size"][self.current_iteration]))
row.append("{:>25}".format(Timer().GetTimeStamp()))
historyWriter.writerow(row)
def _WriteCurrentValuesToFile(self):
with open(self.complete_log_file_name, 'a') as csvfile:
historyWriter = csv.writer(csvfile,
delimiter=',',
quotechar='|',
quoting=csv.QUOTE_MINIMAL)
row = []
row.append("{:>4d}".format(self.current_index))
objective_id = self.objectives[0]["identifier"].GetString()
row.append(" {:> .5E}".format(self.history["response_value"]
[objective_id][self.current_index]))
row.append(" {:> .5E}".format(
self.history["abs_change_objective"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["rel_change_objective"][self.current_index]))
for itr in range(self.constraints.size()):
constraint_id = self.constraints[itr]["identifier"].GetString()
row.append(" {:> .5E}".format(
self.history["response_value"][constraint_id][
self.current_index]))
row.append(" {:> .5E}".format(
self.communicator.getReferenceValue(constraint_id)))
row.append(" {:> .5E}".format(
self.history["correction_scaling"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["step_size"][self.current_index]))
row.append("{:>25}".format(Timer().GetTimeStamp()))
historyWriter.writerow(row)
def RunOptimizationLoop(self):
timer = Timer()
timer.StartTimer()
for self.optimization_iteration in range(1,self.max_iterations):
print("\n>===================================================================")
print("> ",timer.GetTimeStamp(),": Starting optimization iteration ", self.optimization_iteration)
print(">===================================================================\n")
timer.StartNewLap()
self.__initializeNewShape()
self.__analyzeShape()
self.__computeShapeUpdate()
self.__logCurrentOptimizationStep()
print("\n> Time needed for current optimization step = ", timer.GetLapTime(), "s")
print("> Time needed for total optimization so far = ", timer.GetTotalTime(), "s")
if self.__isAlgorithmConverged():
break
else:
self.__determineAbsoluteChanges()
def _WriteCurrentValuesToFile(self):
with open(self.complete_log_file_name, 'a') as csvfile:
historyWriter = csv.writer(csvfile,
delimiter=',',
quotechar='|',
quoting=csv.QUOTE_MINIMAL)
row = []
row.append(str("{:>4d}".format(self.current_iteration)))
objective_id = self.specified_objectives[0][
"identifier"].GetString()
row.append(
str("{:>20f}".format(
self.value_history[objective_id][self.current_iteration])))
row.append(
str("{:>12f}".format(self.value_history["abs_change_obj"][
self.current_iteration])))
row.append(
str("{:>12f}".format(self.value_history["rel_change_obj"][
self.current_iteration])))
for itr in range(self.specified_constraints.size()):
constraint_id = self.specified_constraints[itr][
"identifier"].GetString()
row.append(
str("{:>20f}".format(self.value_history[constraint_id][
self.current_iteration])))
row.append(
str("{:>20f}".format(
self.communicator.getReferenceValue(constraint_id))))
row.append(
str("{:>12f}".format(self.value_history["len_bar_cons"][
self.current_iteration][itr])))
row.append(
str("{:>12f}".format(self.value_history["adj_len_bar_cons"]
[self.current_iteration][itr])))
row.append(
str("{:>12d}".format(
self.value_history["bi_itrs"][self.current_iteration])))
row.append(
str("{:>12f}".format(
self.value_history["bi_err"][self.current_iteration])))
row.append(
str("{:>17f}".format(self.value_history["test_norm_dX_bar"][
self.current_iteration])))
row.append(
str("{:>12f}".format(
self.value_history["norm_dX"][self.current_iteration])))
row.append(
str("{:>12f}".format(self.value_history["step_length"][
self.current_iteration])))
row.append("{:>25}".format(Timer().GetTimeStamp()))
historyWriter.writerow(row)
def __WriteDataToLogFile( self ):
objectiveValue = self.objectiveHistory[self.currentIteration]
constraintValue = self.constraintHistory[self.currentIteration]
absoluteChangeOfObjectiveValue = self.absoluteChangeOfObjectiveHistory[self.currentIteration]
relativeChangeOfObjectiveValue = self.relativeChangeOfObjectiveHistory[self.currentIteration]
with open(self.completeResponseLogFileName, 'a') as csvfile:
historyWriter = csv.writer(csvfile, delimiter=',',quotechar='|',quoting=csv.QUOTE_MINIMAL)
row = []
row.append("{:<4s}".format(str(self.currentIteration)))
row.append(str("{:>20f}".format(objectiveValue)))
row.append(str("{:>12f}".format(absoluteChangeOfObjectiveValue)))
row.append(str("{:>12f}".format(relativeChangeOfObjectiveValue)))
row.append(str("{:>20f}".format(constraintValue)))
row.append(str("{:>20f}".format(self.constraintOutputReference)))
row.append(str("{:>13f}".format(self.optimizationSettings["optimization_algorithm"]["correction_scaling"].GetDouble())))
row.append(str("{:>13f}".format(self.optimizationSettings["line_search"]["step_size"].GetDouble())))
row.append("{:>25}".format(Timer().GetTimeStamp()))
historyWriter.writerow(row)
def Optimize(self):
algorithm_name = self.optimization_settings["optimization_algorithm"][
"name"].GetString()
print(
"\n> =============================================================================================================="
)
print("> ",
Timer().GetTimeStamp(),
": Starting optimization using the following algorithm: ",
algorithm_name)
print(
"> ==============================================================================================================\n"
)
if self.model_part_controller.IsOptimizationModelPartAlreadyImported():
print(
"> Skipping import of optimization model part as already done by another application. "
)
else:
self.model_part_controller.ImportOptimizationModelPart()
algorithm = algorithm_factory.CreateAlgorithm(
self.optimization_settings, self.model_part_controller,
self.analyzer, self.communicator)
algorithm.InitializeOptimizationLoop()
algorithm.RunOptimizationLoop()
algorithm.FinalizeOptimizationLoop()
print(
"\n> =============================================================================================================="
)
print(
"> Finished optimization "
)
print(
"> ==============================================================================================================\n"
)
# ==============================================================================
def _WriteCurrentValuesToFile(self):
with open(self.complete_log_file_name, 'a') as csvfile:
historyWriter = csv.writer(csvfile,
delimiter=',',
quotechar='|',
quoting=csv.QUOTE_MINIMAL)
row = []
row.append("{:>12d}".format(self.current_index))
row.append("{:>10d}".format(
self.history["outer_iteration"][self.current_index]))
row.append("{:>10d}".format(
self.history["inner_iteration"][self.current_index]))
objective_id = self.objectives[0]["identifier"].GetString()
row.append(" {:> .5E}".format(
self.history["lagrange_value"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["lagrange_value_relative_change"][
self.current_index]))
row.append(" {:> .5E}".format(self.history["response_value"]
[objective_id][self.current_index]))
row.append(" {:> .5E}".format(
self.history["abs_change_objective"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["rel_change_objective"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["max_norm_objective_gradient"][
self.current_index]))
row.append(" {:> .5E}".format(
self.history["penalty_lambda"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["penalty_value"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["penalty_scaling"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["penalty_factor"][self.current_index]))
row.append(" {:> .5E}".format(
self.history["step_size"][self.current_index]))
row.append("{:>25}".format(Timer().GetTimeStamp()))
historyWriter.writerow(row)
pool.apply_async(get_x_y,
args=(i, fs, "test", resample),
callback=progress_bar) for i in range(size)
]
output = [p.get() for p in results]
x_test, y_test = split_x_y(output)
return x_test, y_test
if __name__ == '__main__':
file_dir = "gcc_phat_data"
with Timer("Training data"):
x_train_raw, y_train_raw = get_train(int(len(df.index) * .9), 12, True,
8000)
x_train = cnn.reshape_x_for_cnn(cnn.normalize_x_data(x_train_raw))
np.save("{dir}/x_train.npy".format(dir=file_dir), x_train)
y_train = to_categorical(cnn.y_to_class_id(y_train_raw))
np.save("{dir}/y_train.npy".format(dir=file_dir), y_train)
with Timer("Testing data"):
x_test_raw, y_test_raw = get_test(int(len(df.index) * .1), 12, True,
8000)
x_test = cnn.reshape_x_for_cnn(cnn.normalize_x_data(x_test_raw))
np.save("{dir}/x_test.npy".format(dir=file_dir), x_test)
def RunOptimizationLoop(self):
timer = Timer()
timer.StartTimer()
current_lambda = self.lambda0
penalty_scaling = self.penalty_scaling_0
penalty_factor = self.penalty_factor_0
total_iteration = 0
is_design_converged = False
is_max_total_iterations_reached = False
previos_L = None
for outer_iteration in range(1, self.max_outer_iterations + 1):
for inner_iteration in range(1, self.max_inner_iterations + 1):
total_iteration += 1
timer.StartNewLap()
print(
"\n>======================================================================================="
)
print("> ", timer.GetTimeStamp(), ": Starting iteration ",
outer_iteration, ".", inner_iteration, ".",
total_iteration, "(outer . inner . total)")
print(
">=======================================================================================\n"
)
# Initialize new shape
self.model_part_controller.UpdateTimeStep(total_iteration)
for node in self.design_surface.Nodes:
new_shape_change = node.GetSolutionStepValue(
ALPHA_MAPPED) * node.GetValue(
BEAD_DIRECTION) * self.bead_height
node.SetSolutionStepValue(SHAPE_CHANGE, new_shape_change)
self.model_part_controller.DampNodalVariableIfSpecified(
SHAPE_CHANGE)
for node in self.design_surface.Nodes:
shape_update = node.GetSolutionStepValue(
SHAPE_CHANGE, 0) - node.GetSolutionStepValue(
SHAPE_CHANGE, 1)
node.SetSolutionStepValue(SHAPE_UPDATE, shape_update)
self.model_part_controller.UpdateMeshAccordingInputVariable(
SHAPE_UPDATE)
self.model_part_controller.SetReferenceMeshToMesh()
# Analyze shape
self.communicator.initializeCommunication()
self.communicator.requestValueOf(
self.objectives[0]["identifier"].GetString())
self.communicator.requestGradientOf(
self.objectives[0]["identifier"].GetString())
self.analyzer.AnalyzeDesignAndReportToCommunicator(
self.design_surface, total_iteration, self.communicator)
objective_value = self.communicator.getStandardizedValue(
self.objectives[0]["identifier"].GetString())
objGradientDict = self.communicator.getStandardizedGradient(
self.objectives[0]["identifier"].GetString())
WriteDictionaryDataOnNodalVariable(
objGradientDict, self.optimization_model_part, DF1DX)
self.model_part_controller.DampNodalVariableIfSpecified(DF1DX)
# Compute sensitivities w.r.t. scalar design variable alpha
for node in self.design_surface.Nodes:
raw_gradient = node.GetSolutionStepValue(DF1DX)
bead_dir = node.GetValue(BEAD_DIRECTION)
dF1dalpha_i = self.bead_height * (
raw_gradient[0] * bead_dir[0] + raw_gradient[1] *
bead_dir[1] + raw_gradient[2] * bead_dir[2])
node.SetSolutionStepValue(DF1DALPHA, dF1dalpha_i)
# Map gradient of objective
self.mapper.InverseMap(DF1DALPHA, DF1DALPHA_MAPPED)
# Compute scaling
max_norm_objective_gradient = self.optimization_utilities.ComputeMaxNormOfNodalVariable(
DF1DALPHA_MAPPED)
if outer_iteration == 1 and inner_iteration == min(
3, self.max_inner_iterations):
if self.bead_side == "positive" or self.bead_side == "negative":
max_norm_penalty_gradient = 1.0
elif self.bead_side == "both":
max_norm_penalty_gradient = 2.0
penalty_scaling = max_norm_objective_gradient / max_norm_penalty_gradient
# Compute penalization term
penalty_value = 0.0
if self.bead_side == "positive":
for node in self.design_surface.Nodes:
if not node.Is(BOUNDARY):
alpha_i = node.GetSolutionStepValue(ALPHA)
penalty_value += penalty_scaling * (alpha_i -
alpha_i**2)
penalty_gradient_i = penalty_scaling * (
1 - 2 * alpha_i)
node.SetSolutionStepValue(DPDALPHA,
penalty_gradient_i)
elif self.bead_side == "negative":
for node in self.design_surface.Nodes:
if not node.Is(BOUNDARY):
alpha_i = node.GetSolutionStepValue(ALPHA)
penalty_value += penalty_scaling * (-alpha_i -
alpha_i**2)
penalty_gradient_i = penalty_scaling * (
-1 - 2 * alpha_i)
node.SetSolutionStepValue(DPDALPHA,
penalty_gradient_i)
elif self.bead_side == "both":
for node in self.design_surface.Nodes:
if not node.Is(BOUNDARY):
alpha_i = node.GetSolutionStepValue(ALPHA)
penalty_value += penalty_scaling * (-alpha_i**2 +
1)
penalty_gradient_i = penalty_scaling * (-2 *
alpha_i)
node.SetSolutionStepValue(DPDALPHA,
penalty_gradient_i)
# Filter penalty term if specified
if self.filter_penalty_term:
self.mapper.InverseMap(DPDALPHA, DPDALPHA_MAPPED)
# Compute value of Lagrange function
L = objective_value + current_lambda * penalty_value + 0.5 * penalty_factor * penalty_value**2
if inner_iteration == 1:
dL_relative = 0.0
else:
dL_relative = 100 * (L / previos_L - 1)
# Compute gradient of Lagrange function
if self.filter_penalty_term:
penalty_gradient_variable = DPDALPHA_MAPPED
else:
penalty_gradient_variable = DPDALPHA
for node in self.design_surface.Nodes:
dLdalpha_i = node.GetSolutionStepValue(
DF1DALPHA_MAPPED
) + current_lambda * node.GetSolutionStepValue(
penalty_gradient_variable)
node.SetSolutionStepValue(DLDALPHA, dLdalpha_i)
# Normalization using infinity norm
dLdalpha_for_normalization = {}
for node in self.design_surface.Nodes:
nodal_alpha = node.GetSolutionStepValue(ALPHA)
if nodal_alpha == self.lower_bound or nodal_alpha == self.upper_bound or node.Is(
BOUNDARY):
dLdalpha_for_normalization[node.Id] = 0.0
else:
dLdalpha_for_normalization[
node.Id] = node.GetSolutionStepValue(DLDALPHA)**2
max_value = math.sqrt(max(dLdalpha_for_normalization.values()))
if max_value == 0.0:
max_value = 1.0
# Compute updated design variable
for node in self.design_surface.Nodes:
dalpha = -self.step_size * node.GetSolutionStepValue(
DLDALPHA) / max_value
alpha_new = node.GetSolutionStepValue(ALPHA) + dalpha
# Enforce bounds
alpha_new = max(alpha_new, self.lower_bound)
alpha_new = min(alpha_new, self.upper_bound)
# Enforce constraints
if node.Is(BOUNDARY):
alpha_new = 0.0
node.SetSolutionStepValue(ALPHA, alpha_new)
alpha_new_vectorized = alpha_new * node.GetValue(
BEAD_DIRECTION)
node.SetSolutionStepValue(CONTROL_POINT_CHANGE,
alpha_new_vectorized)
# Map design variables
self.mapper.Map(ALPHA, ALPHA_MAPPED)
# Log current optimization step and store values for next iteration
additional_values_to_log = {}
additional_values_to_log[
"step_size"] = self.algorithm_settings["line_search"][
"step_size"].GetDouble()
additional_values_to_log["outer_iteration"] = outer_iteration
additional_values_to_log["inner_iteration"] = inner_iteration
additional_values_to_log["lagrange_value"] = L
additional_values_to_log[
"lagrange_value_relative_change"] = dL_relative
additional_values_to_log["penalty_value"] = penalty_value
additional_values_to_log["penalty_lambda"] = current_lambda
additional_values_to_log["penalty_scaling"] = penalty_scaling
additional_values_to_log["penalty_factor"] = penalty_factor
additional_values_to_log[
"max_norm_objective_gradient"] = max_norm_objective_gradient
self.data_logger.LogCurrentValues(total_iteration,
additional_values_to_log)
self.data_logger.LogCurrentDesign(total_iteration)
previos_L = L
# Convergence check of inner loop
if total_iteration == self.max_total_iterations:
is_max_total_iterations_reached = True
break
if inner_iteration >= self.min_inner_iterations and inner_iteration > 1:
# In the first outer iteration, the constraint is not yet active and properly scaled. Therefore, the objective is used to check the relative improvement
if outer_iteration == 1:
if abs(
self.data_logger.GetValue(
"rel_change_obj", total_iteration)
) < self.inner_iteration_tolerance:
break
else:
if abs(dL_relative) < self.inner_iteration_tolerance:
break
if penalty_value == 0.0:
is_design_converged = True
break
print("\n> Time needed for current optimization step = ",
timer.GetLapTime(), "s")
print("> Time needed for total optimization so far = ",
timer.GetTotalTime(), "s")
# Compute penalty factor such that estimated Lagrange multiplier is obtained
if outer_iteration == 1:
penalty_factor = self.estimated_lagrange_multiplier / penalty_value
# Update lambda
current_lambda = current_lambda + penalty_factor * penalty_value
print("\n> Time needed for current optimization step = ",
timer.GetLapTime(), "s")
print("> Time needed for total optimization so far = ",
timer.GetTotalTime(), "s")
# Check convergence of outer loop
if outer_iteration == self.max_outer_iterations:
print(
"\n> Maximal outer iterations of optimization problem reached!"
)
break
if is_max_total_iterations_reached:
print(
"\n> Maximal total iterations of optimization problem reached!"
)
break
if is_design_converged:
print(
"\n> Update of design variables is zero. Optimization converged!"
)
break
def RunOptimizationLoop(self):
timer = Timer()
timer.StartTimer()
for self.opt_iteration in range(
1, self.algorithm_settings["max_iterations"].GetInt() + 1):
print(
"\n>==================================================================="
)
print("> ", timer.GetTimeStamp(),
": Starting optimization iteration ", self.opt_iteration)
print(
">===================================================================\n"
)
timer.StartNewLap()
self.__InitializeNewShape()
self.__AnalyzeShape()
self.__PostProcessGradientsObtainedFromAnalysis()
len_obj, dir_obj, len_eqs, dir_eqs, len_ineqs, dir_ineqs = self.__ConvertAnalysisResultsToLengthDirectionFormat(
)
step_length = self.__DetermineMaxStepLength()
len_bar_obj, len_bar_eqs, len_bar_ineqs = self.__ExpressInStepLengthUnit(
len_obj, len_eqs, len_ineqs, step_length)
dX_bar, process_details = self.__DetermineStep(
len_bar_obj, dir_obj, len_bar_eqs, dir_eqs, len_bar_ineqs,
dir_ineqs)
dX = self.__ComputeShapeUpdate(dX_bar, step_length)
values_to_be_logged = {}
values_to_be_logged["len_bar_obj"] = len_bar_obj
values_to_be_logged[
"len_bar_cons"] = self.__CombineConstraintDataToOrderedList(
len_bar_eqs, len_bar_ineqs)
values_to_be_logged["step_length"] = step_length
values_to_be_logged["test_norm_dX_bar"] = process_details[
"test_norm_dX"]
values_to_be_logged["bi_itrs"] = process_details["bi_itrs"]
values_to_be_logged["bi_err"] = process_details["bi_err"]
values_to_be_logged["adj_len_bar_obj"] = process_details[
"adj_len_obj"]
values_to_be_logged[
"adj_len_bar_cons"] = self.__CombineConstraintDataToOrderedList(
process_details["adj_len_eqs"],
process_details["adj_len_ineqs"])
values_to_be_logged["norm_dX"] = NormInf3D(dX)
self.__LogCurrentOptimizationStep(values_to_be_logged)
print("\n> Time needed for current optimization step = ",
timer.GetLapTime(), "s")
print("> Time needed for total optimization so far = ",
timer.GetTotalTime(), "s")
def __DetermineStep(self, len_obj, dir_obj, len_eqs, dir_eqs, len_ineqs,
dir_ineqs):
print("\n> Starting determination of step...")
timer = Timer()
timer.StartTimer()
# Create projector object wich can do the projection in the orthogonalized subspace
projector = Projector(len_obj, dir_obj, len_eqs, dir_eqs, len_ineqs,
dir_ineqs, self.algorithm_settings)
# 1. Test projection if there is room for objective improvement
# I.e., the actual step length to become feasible for an inactive threshold is smaller than 1 and hence a part of the step can be dedicated to objective improvement
len_obj_test = 0.01
inactive_threshold = 100
test_norm_dX, is_projection_sucessfull = projector.RunProjection(
len_obj_test, inactive_threshold)
print("> Time needed for one projection step = ", timer.GetTotalTime(),
"s")
# 2. Determine step following two different modes depending on the previos found step length to the feasible domain
if is_projection_sucessfull:
if test_norm_dX < 1: # Minimizing mode
print("\n> Computing projection case 1...")
func = lambda len_obj: projector.RunProjection(
len_obj, inactive_threshold)
len_obj_min = len_obj_test
len_obj_max = 1.3
bi_target = 1
bi_tolerance = self.algorithm_settings[
"bisectioning_tolerance"].GetDouble()
bi_max_itr = self.algorithm_settings[
"bisectioning_max_itr"].GetInt()
len_obj_result, bi_itrs, bi_err = PerformBisectioning(
func, len_obj_min, len_obj_max, bi_target, bi_tolerance,
bi_max_itr)
projection_results = projector.GetDetailedResultsOfLatestProjection(
)
else: # Correction mode
print("\n> Computing projection case 2...")
len_obj = self.algorithm_settings[
"obj_share_during_correction"].GetDouble()
func = lambda threshold: projector.RunProjection(
len_obj, threshold)
threshold_min = 0
threshold_max = 1.3
bi_target = 1
bi_tolerance = self.algorithm_settings[
"bisectioning_tolerance"].GetDouble()
bi_max_itr = self.algorithm_settings[
"bisectioning_max_itr"].GetInt()
l_threshold_result, bi_itrs, bi_err = PerformBisectioning(
func, threshold_min, threshold_max, bi_target,
bi_tolerance, bi_max_itr)
projection_results = projector.GetDetailedResultsOfLatestProjection(
)
else:
raise RuntimeError(
"Case of not converged test projection not yet implemented yet!"
)
print("\n> Time needed for determining step = ", timer.GetTotalTime(),
"s")
process_details = {
"test_norm_dX": test_norm_dX,
"bi_itrs": bi_itrs,
"bi_err": bi_err,
"adj_len_obj": projection_results["adj_len_obj"],
"adj_len_eqs": projection_results["adj_len_eqs"],
"adj_len_ineqs": projection_results["adj_len_ineqs"]
}
return projection_results["dX"], process_details
import numpy as np
import multiprocessing as mp
import pandas as pd
from custom_timer import Timer
import data_generator_lib
from tqdm import tqdm
pbar = tqdm(total=388800)
def progress(x):
pbar.update()
if __name__ == "__main__":
with Timer("Data Generation"):
# Set up constant parameters: room dim etc..
b = Binaural(room_dim=np.r_[3., 3., 2.5],
max_order=17,
speed_of_sound=343,
inter_aural_distance=0.2,
mic_height=1)
# set up parallel processing
pool = mp.Pool(processes=16)
# parallel processing of data
results = [pool.apply_async(data_generator_lib.generate_training_data,
args=(
source_azimuth_x,
source_distance_from_room_centre,
def tindar_experiment(experiment_id="default_id",
n_list=[10, 30, 100, 200, 300],
connectedness_list=[1, 4, 8],
solvers=["pulp", "heuristic"],
repeat=10,
result_directory=PROJECT_DIR + "/data",
save_problem_and_solution=False,
verbose=True):
'''Writes results of Tindar experiment to a json file
Parameters
----------
experiment_id: str
n_list: list of ints
how many people in Tindar community
connectedness_list: list of ints or floats
controlling how many people are interested in each other
solvers: list of strings
pulp and/or heuristic, which solvers should be used to
compute results
repeat: int
number of times a combination of n - connectedness should be
repeated
result_directory: str of a path
save_problem_and_solution: bool
if true, saves the love_matrix and solution matrix
verbose: str
'''
result_path = f"{result_directory}/results_experiment_{experiment_id}.json"
parameters = tuple(itertools.product(n_list, connectedness_list))
tindar_problems_nested = [[
TindarGenerator(p[0], p[1]) for _ in range(repeat)
] for p in parameters]
tindar_problems = [
item for sublist in tindar_problems_nested for item in sublist
]
tindars = [
Tindar(tindar_problem=tindar_problem)
for tindar_problem in tindar_problems
]
results = []
counter = 1
timer = Timer()
for solver in solvers:
for j, tp in enumerate(tindars):
if verbose:
print("----------------------------------------------------")
print(f"Experiment {counter}/{(len(tindars)*len(solvers))}: "
f"n={tp.n} , connectedness={tp.connectedness}, "
f"solver={solver}")
timer.start()
obj, sol, stat = tindar_solution(tp, solver)
stop = timer.stop()
result = {
"experiment_id": experiment_id,
"tindar_id": j,
"n": tp.n,
"connectedness": tp.connectedness,
"p": tp.p,
"solver": solver,
"status": stat,
"objective_value": obj,
"time": stop
}
if save_problem_and_solution:
result = {
**result, "love_matrix": tp.love_matrix,
"solution": sol
}
if verbose:
print(f"{solver} objective value: {obj}")
results.append(result)
counter += 1
with open(result_path, 'w') as fp:
json.dump(results, fp)
if counter > MAX_RUNS or counter > N_SAMPLE:
break
print("Processing chunk {}".format(idx))
_min, _max = np.min(chunk), np.max(chunk)
# Getting sample data
sample_raw = eeg.raw.copy().crop(_min, _max, include_tmax=False)
eog_channels = eeg.eog_channels.copy().crop(_min,
_max,
include_tmax=False)
# Apply baseline correction
with Timer(
block_name='Baseline correction',
verbose=True,
) as t1:
sample_raw_baseline = sample_raw.copy()
sample_raw_baseline.apply_function(baseline_calc)
timings = timings.append(
{
'task': i,
'chunk': idx,
'step': t1.block_name,
'time': t1.elapsed_secs
},
ignore_index=True)
# eog_channels.apply_function(baseline_calc)
# Apply bandpass filter
with Timer(
print("Processing chunk {}".format(idx))
# if counter > N_SAMPLE:
# break
_min, _max = np.min(chunk), np.max(chunk)
# Getting sample data
sample_raw = eeg.raw.copy().crop(_min, _max, include_tmax=False)
eog_channels = eeg.eog_channels.copy().crop(_min,
_max,
include_tmax=False)
# Apply baseline correction
with Timer(
block_name='Baseline correction',
verbose=True,
):
sample_raw_baseline = sample_raw.copy()
sample_raw_baseline.apply_function(baseline_calc)
# eog_channels.apply_function(baseline_calc)
# Apply bandpass filter
with Timer(
block_name='Bandpass filter',
verbose=True,
):
sample_raw_bandpass = sample_raw_baseline.copy()
sample_raw_bandpass.apply_function(butter_bandpass_filter)
# eog_channels.apply_function(butter_bandpass_filter)
# Apply ICA
