def setUp(self):
""" Define some rql and create a connection.
"""
# Set logging level
logging.basicConfig(level=logging.DEBUG)
# Ask for url & login information
http_url = raw_input(
"\nEnter the http url [default: http://localhost:8080/]: ")
if not http_url:
http_url = "http://localhost:8080/"
login = raw_input("\nEnter the login: "******"Enter the password: "******"Any S WHERE S is Subject")
self.rql2 = ("Any S WHERE S is Scan, S has_data A, A field '3T', "
"S in_assessment B, B timepoint 'V0', B concerns D, "
"D code_in_study 'subject2'")
# HTTP test
self.connection = CWInstanceConnection(http_url,
login,
password,
port=22)
def setUp(self):
""" Define some rql and create a connection.
"""
# Set logging level
logging.basicConfig(level=logging.DEBUG)
# Ask for url & login information
http_url = raw_input(
"\nEnter the http url [default: http://localhost:8080/]: ")
if not http_url:
http_url = "http://localhost:8080/"
login = raw_input("\nEnter the login [default: admin]: ")
if not login:
login = "******"
password = getpass.getpass("Enter the password [default: a]: ")
if not password:
password = "******"
# Create dummy rqls
self.rql1 = ("Any C, G Where X is Subject, X code_in_study C, "
"X handedness 'ambidextrous', X gender G")
self.rql2 = ("Any S WHERE S is Subject")
self.rql3 = ("Any S WHERE S is Scan, S has_data A, A field '3T', "
"S in_assessment B, B timepoint 'V0', B concerns D, "
"D code_in_study 'subject1'")
# HTTP test
self.connection = CWInstanceConnection(http_url,
login,
password,
port=9191)
def connect_metagen_server(login=None,
password=None,
metagen_url=DEFAULT_METAGEN_URL):
"""
Create a connection to a Metagen server. The login and password are
requested interactively if not provided.
"""
if login is None:
login = raw_input("\nMetagen login: "******"Metagen password: ")
metagen_connection = CWInstanceConnection(url=metagen_url,
login=login,
password=password)
return metagen_connection
def setUp(self):
""" Define some rql and create a connection.
"""
# Set logging level
logging.basicConfig(level=logging.DEBUG)
# Ask for url & login information
https_url = raw_input(
"\nEnter the http url [default: https://imagen2.cea.fr/database/]: ")
if not https_url:
https_url = "https://imagen2.cea.fr/database/"
login = raw_input("\nEnter the login: "******"Enter the password: "******"Any C, G Where X is Subject, X code_in_study C, "
"X handedness 'ambidextrous', X gender G")
# HTTP test
self.connection = CWInstanceConnection(https_url, login, password,
realm="Imagen")
return login, password
# Query demographics
if __name__ == "__main__":
""" query_subject
"""
#set login, password, DB
url = "https://imagen2.cea.fr/database/"
login, password = get_credentials()
if (login is None) or (password is None):
print 'login: '******'password: '******'DAWBA-dawba-youth', "
"QR in_assessment A, A timepoint 'BL', QR file F, "
"F data D, QR subject S, S code_in_study ID, "
"S handedness HAND, S gender SEX")
# execute
rset = connect.execute(rql, export_type="json")
# parse the result with specifi attention for the last field
loaded_rset = [(sid, handednesss, sex, int(sdata[u'sstartdate']))
for sid, handednesss, sex, sdata in rset
