def test_redefined_args(self):
runtime_context = RuntimeContext()
runtime_context.use_container = False
runtime_context.on_error = "continue"
f = cwltool.factory.Factory(runtime_context=runtime_context)
assert f.runtime_context.use_container is False
assert f.runtime_context.on_error == "continue"
def test_redefined_args(self):
runtime_context = RuntimeContext()
runtime_context.use_container = False
runtime_context.on_error = "continue"
f = cwltool.factory.Factory(runtime_context=runtime_context)
assert f.runtime_context.use_container is False
assert f.runtime_context.on_error == "continue"
def test_factory_redefined_args() -> None:
runtime_context = RuntimeContext()
runtime_context.use_container = False
runtime_context.on_error = "continue"
factory = cwltool.factory.Factory(runtime_context=runtime_context)
assert factory.runtime_context.use_container is False
assert factory.runtime_context.on_error == "continue"
def test_compute_checksum():
runtime_context = RuntimeContext()
runtime_context.compute_checksum = True
runtime_context.use_container = onWindows()
factory = cwltool.factory.Factory(runtime_context=runtime_context)
echo = factory.make(get_data("tests/wf/cat-tool.cwl"))
output = echo(
file1={"class": "File",
"location": get_data("tests/wf/whale.txt")},
reverse=False)
assert output['output']["checksum"] == "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376"
def test_compute_checksum(self):
runtime_context = RuntimeContext()
runtime_context.compute_checksum = True
runtime_context.use_container = onWindows()
f = cwltool.factory.Factory(runtime_context=runtime_context)
echo = f.make(get_data("tests/wf/cat-tool.cwl"))
output = echo(
file1={"class": "File",
"location": get_data("tests/wf/whale.txt")},
reverse=False)
self.assertEquals(output['output']["checksum"], "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376")
def get_windows_safe_factory(runtime_context=None, # type: RuntimeContext
loading_context=None, # type: LoadingContext
executor=None # type: Any
): # type: (...) -> Factory
if onWindows():
if not runtime_context:
runtime_context = RuntimeContext()
runtime_context.find_default_container = functools.partial(
force_default_container, windows_default_container_id)
runtime_context.use_container = True
runtime_context.default_container = windows_default_container_id
return Factory(executor, loading_context, runtime_context)
def get_windows_safe_factory(runtime_context=None, # type: RuntimeContext
loading_context=None, # type: LoadingContext
executor=None # type: Any
): # type: (...) -> Factory
if onWindows():
if not runtime_context:
runtime_context = RuntimeContext()
runtime_context.find_default_container = functools.partial(
force_default_container, windows_default_container_id)
runtime_context.use_container = True
runtime_context.default_container = windows_default_container_id
return Factory(executor, loading_context, runtime_context)
def test_compute_checksum() -> None:
runtime_context = RuntimeContext()
runtime_context.compute_checksum = True
runtime_context.use_container = onWindows()
factory = cwltool.factory.Factory(runtime_context=runtime_context)
echo = factory.make(get_data("tests/wf/cat-tool.cwl"))
output = echo(
file1={"class": "File", "location": get_data("tests/wf/whale.txt")},
reverse=False,
)
assert isinstance(output, dict)
result = output["output"]
assert isinstance(result, dict)
assert result["checksum"] == "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376"