def get_main_output(self, new_args):
process = subprocess.Popen(
[sys.executable, "-m", "cwltool"] + new_args,
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
stdout, stderr = process.communicate()
return process.returncode, stdout.decode(), stderr.decode()
def get_main_output(self, new_args):
process = subprocess.Popen(
[sys.executable, "-m", "cwltool"] + new_args,
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
stdout, stderr = process.communicate()
return process.returncode, stdout.decode(), stderr.decode()
def get_main_stderr(self, new_args):
cwltool_base = path.join(path.dirname(path.abspath(__name__)),
"cwltool")
process = subprocess.Popen([sys.executable, "-m", "cwltool"] +
new_args,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
stdout, stderr = process.communicate()
return process.returncode, stderr.decode()
def test_env_filtering(factor):
test_file = "tests/env.cwl"
commands = factor.split()
commands.extend([get_data(test_file)])
error_code, stdout, stderr = get_main_output(commands)
process = subprocess.Popen(
[
"sh",
"-c",
r"""getTrueShellExeName() {
local trueExe nextTarget 2>/dev/null
trueExe=$(ps -o comm= $$) || return 1
[ "${trueExe#-}" = "$trueExe" ] || trueExe=${trueExe#-}
[ "${trueExe#/}" != "$trueExe" ] || trueExe=$([ -n "$ZSH_VERSION" ] && which -p "$trueExe" || which "$trueExe")
while nextTarget=$(readlink "$trueExe"); do trueExe=$nextTarget; done
printf '%s\n' "$(basename "$trueExe")"
} ; getTrueShellExeName""",
],
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
env=None,
)
sh_name, sh_name_err = process.communicate()
sh_name = sh_name.decode("utf-8").strip()
assert "completed success" in stderr, (error_code, stdout, stderr)
assert error_code == 0, (error_code, stdout, stderr)
if onWindows():
target = 5
elif sh_name == "dash":
target = 4
else: # bash adds "SHLVL" and "_" environment variables
target = 6
result = json.loads(stdout)["env_count"]
details = ""
if result != target:
_, details, _ = get_main_output(
["--quiet", get_data("tests/env2.cwl")])
print(sh_name)
print(sh_name_err)
print(details)
assert result == target, (error_code, sh_name, sh_name_err, details,
stdout, stderr)