def get_spotfinder_data(self, params):
pointdata = []
test_pattern = False
if (
test_pattern is True
and self.raw_image.__class__.__name__.find("CSPadDetector") >= 0
):
key_count = -1
for key, asic in self.raw_image._tiles.items():
key_count += 1
focus = asic.focus()
for slow in range(0, focus[0], 20):
for fast in range(0, focus[1], 20):
slowpic, fastpic = self.flex_image.tile_readout_to_picture(
key_count, slow, fast
)
mr1, mr2 = self.picture_fast_slow_to_map_relative(
fastpic, slowpic
)
pointdata.append((mr1, mr2, {"data": key}))
elif self.raw_image.__class__.__name__.find("CSPadDetector") >= 0:
from cxi_xdr_xes.cftbx.spotfinder.speckfinder import spotfind_readout
key_count = -1
for key, asic in self.raw_image._tiles.items():
key_count += 1
indexing = spotfind_readout(
readout=asic, peripheral_margin=params.spotfinder.peripheral_margin
)
for spot in indexing:
slow = int(round(spot[0]))
fast = int(round(spot[1]))
slowpic, fastpic = self.flex_image.tile_readout_to_picture(
key_count, slow, fast
)
mr1, mr2 = self.picture_fast_slow_to_map_relative(fastpic, slowpic)
pointdata.append((mr1, mr2, {"data": key}))
else:
from spotfinder.command_line.signal_strength import master_params
working_params = master_params.fetch(
sources=[]
) # placeholder for runtime mods
working_params.show(expert_level=1)
distl_params = working_params.extract()
spotfinder, frameno = self.raw_image.get_spotfinder(distl_params)
spots = spotfinder.images[frameno]["spots_total"]
for spot in spots:
mr = self.picture_fast_slow_to_map_relative(
spot.max_pxl_y() + 0.5, spot.max_pxl_x() + 0.5
)
# spot.ctr_mass_y() + 0.5, spot.ctr_mass_x() + 0.5)
pointdata.append(mr)
return pointdata
def get_spotfinder_data(self, params):
pointdata = []
test_pattern = False
if test_pattern is True and self.raw_image.__class__.__name__.find("CSPadDetector") >= 0:
key_count = -1
for key, asic in self.raw_image._tiles.iteritems():
key_count += 1
focus = asic.focus()
for slow in xrange(0,focus[0],20):
for fast in xrange(0,focus[1],20):
slowpic,fastpic = self.flex_image.tile_readout_to_picture(key_count,slow,fast)
mr1,mr2 = self.picture_fast_slow_to_map_relative(fastpic,slowpic)
pointdata.append((mr1,mr2,{"data":key}))
elif (self.raw_image.__class__.__name__.find("CSPadDetector") >= 0):
from cxi_xdr_xes.cftbx.spotfinder.speckfinder import spotfind_readout
key_count = -1
for key, asic in self.raw_image._tiles.iteritems():
key_count += 1
indexing = spotfind_readout(
readout=asic,
peripheral_margin=params.spotfinder.peripheral_margin)
for spot in indexing:
slow = int(round(spot[0]))
fast = int(round(spot[1]))
slowpic,fastpic = self.flex_image.tile_readout_to_picture(key_count,slow,fast)
mr1,mr2 = self.picture_fast_slow_to_map_relative(fastpic,slowpic)
pointdata.append((mr1,mr2,{"data":key}))
else:
from spotfinder.command_line.signal_strength import master_params
working_params = master_params.fetch(sources = []) #placeholder for runtime mods
working_params.show(expert_level=1)
distl_params = working_params.extract()
spotfinder,frameno = self.raw_image.get_spotfinder(distl_params)
spots = spotfinder.images[frameno]["spots_total"]
for spot in spots:
mr = self.picture_fast_slow_to_map_relative(
spot.max_pxl_y() + 0.5, spot.max_pxl_x() + 0.5)
# spot.ctr_mass_y() + 0.5, spot.ctr_mass_x() + 0.5)
pointdata.append(mr)
return pointdata