from traitsui.api import (View, Item, EnumEditor, Controller, VGroup,
CheckListEditor, TextEditor)
from envisage.api import Plugin, contributes_to
from traits.api import (provides, Callable, List, Str, Property, Any,
on_trait_change)
from pyface.api import ImageResource
from cytoflow.operations.channel_stat import ChannelStatisticOp
import cytoflow.utility as util
from cytoflowgui.op_plugins import IOperationPlugin, OpHandlerMixin, OP_PLUGIN_EXT, shared_op_traits
from cytoflowgui.subset import ISubset, SubsetListEditor
from cytoflowgui.op_plugins.i_op_plugin import PluginOpMixin
from cytoflowgui.workflow import Changed
mean_95ci = lambda x: util.ci(x, np.mean, boots = 100)
geomean_95ci = lambda x: util.ci(x, util.geom_mean, boots = 100)
summary_functions = {"Mean" : np.mean,
"Geom.Mean" : util.geom_mean,
"Count" : len,
"Std.Dev" : np.std,
"Geom.SD" : util.geom_sd_range,
"SEM" : scipy.stats.sem,
"Geom.SEM" : util.geom_sem_range,
"Mean 95% CI" : mean_95ci,
"Geom.Mean 95% CI" : geomean_95ci
}
fill = {"Mean" : 0,
"Geom.Mean" : 0,
"""
A PriorityQueue that only allows one copy of each item.
http://stackoverflow.com/questions/5997189/how-can-i-make-a-unique-value-priority-queue-in-python
"""
def _init(self, maxsize):
PriorityQueue._init(self, maxsize)
self.values = set()
def _put(self, item, heappush=heapq.heappush):
if item[1] not in self.values:
self.values.add(item[1])
PriorityQueue._put(self, item, heappush)
else:
pass
def _get(self, heappop=heapq.heappop):
item = PriorityQueue._get(self, heappop)
self.values.remove(item[1])
return item
summary_functions = {"Mean" : np.mean,
"Geom.Mean" : util.geom_mean,
"Count" : len}
mean_95ci = lambda x: util.ci(x, np.mean, boots = 100)
geomean_95ci = lambda x: util.ci(x, util.geom_mean, boots = 100)
error_functions = {"Std.Dev." : np.std,
"S.E.M" : scipy.stats.sem,
"Mean 95% CI" : mean_95ci,
"Geom.Mean 95% CI" : geomean_95ci}