def load_metadata_template_terms(request):
template_id = request.GET["template_id"]
terms = MetadataTemplate().get_terms_by_template_id(template_id)
if (terms):
return HttpResponse(json_util.dumps(terms))
else:
return HttpResponse(status=500)
def update_template(request):
data = json_util.loads(request.POST["data"])
template_id = request.POST["template_id"]
record = MetadataTemplate().update_template(template_id=template_id, data=data)
if (record):
return HttpResponse(json_util.dumps({"data": data, "template_id": template_id}))
else:
return HttpResponse(status=500)
def new_metadata_template(request):
template_name = request.GET["template_name"]
# record = MetadataTemplate()._new(profile_id=request.session["profile_id"], user_id=request.user.id, template_name=template_name)
d = {"profile_id": request.session["profile_id"], "uid": request.user.id,
"template_name": template_name}
record = MetadataTemplate().save_record({}, **d)
url = reverse("copo:author_template", args=[str(record["_id"])])
return HttpResponse(url)
def export_template(request):
template_id = json_util.loads(request.body)["template_id"]
template = MetadataTemplate().get_terms_by_template_id(template_id)
df = pd.DataFrame()
for term in template["terms"]:
column_heading = term["label"] + "/" + term["iri"]
df[column_heading] = []
response = HttpResponse(content_type='text/csv')
df.to_csv(path_or_buf=response, sep=',', float_format='%.2f', index=False, decimal=".")
response['Content-Disposition'] = 'attachment; filename="export.csv"'
return response
def add_primer_fields(request):
outlist = list()
fields = request.POST["fields"]
filename = request.POST["filename"]
template_id = request.POST["template_id"]
fields = fields.split(",")
# open ontologies file
ontologies = open(lkup.ONTOLOGY_LKUPS["copo_ontologies"])
ont = json_util.loads(ontologies.read())
with open(filename) as jason:
jason = json_util.loads(jason.read())
s_fields = jason["properties"]
for s_f in s_fields:
for ff in s_f["items"]:
for f in fields:
if f == ff["id"]:
# we have a match
tmpdict = {"label": ff["label"]}
try:
value = ont[ff["ontologies"]]["key"]
tmpdict["iri"] = value
tmpdict["ontology_prefix"] = value
tmpdict["type"] = "primer"
except KeyError as e:
tmpdict["iri"] = "Term Undefined"
tmpdict["ontology_prefix"] = "Term Undefined"
tmpdict["type"] = "primer"
outlist.append(tmpdict)
break
ontologies.close()
MetadataTemplate().update_template(template_id, outlist)
return HttpResponse(json_util.dumps({"terms":outlist}))
def update_metadata_template_name(request):
template_name = request.GET["template_name"]
template_id = request.GET["template_id"]
new_name = MetadataTemplate().update_name(template_name=template_name, template_id=template_id)["template_name"]
return HttpResponse(new_name)
def author_template(request, template_id):
record = MetadataTemplate().get_by_id(template_id)
context = {"template_name": record["template_name"], "template_id": template_id}
return render(request, "copo/author_metadata_template.html", context)