class bfastForm(forms.Form):
description = forms.CharField(initial='put your job description here', \
widget=forms.TextInput(attrs={'size':'50'}) )
appname = forms.CharField(widget=forms.HiddenInput,initial='chipseq')
availgenome_label = 'Choose one of the following genome as a reference geonome'
availgenome = [['hg19',' Human (hg19)'],
['hg18',' Human (hg18)'],
['mm9','Mouse (mm9)'],
['ws200','C. Elegans (WS200)'],
['bgr1','B. Glumae (BGR1)'],
['yeast','yeast']
]
Reference_GENOME = forms.ChoiceField( widget=Select(), label = 'Choose Reference Genome' \
,choices=availgenome, initial = 'hg19')
mapping_tools = [['BWA','BWA'],['BOWTIE','BOWTIE'],['BFAST','BFAST'],
['Stampy','Stampy'],
['SHRiMP2','SHRiMP2'],['SOAP2','SOAP2'],
['Novoalign','Novoalign'],
['MAQ','MAQ']
]
mapping = forms.ChoiceField(widget=Select(), label="Choose Mapping Tool",\
choices=mapping_tools, initial =mapping_tools[0][0])
colorspace = forms.ChoiceField(widget=Select(), \
label = "Color Space",choices=[['false','No'], \
['true','Yes']], initial= 'False' )
pairedend = forms.ChoiceField(widget=Select(), \
label = "Paired End",choices=[['false','No'], \
['true','Yes']], initial= 'False' )
chipseq_data = []
try:
dirlist = os.listdir(os.path.join( "/home/cctsg/NGSDATA/user_input"))
for fname in dirlist:
if not fname.startswith("."):
chipseq_data.append([fname,fname])
except:
chipseq_data.append(["test.fastq","test.fastq"])
main_input_name = forms.ChoiceField( widget=Select(), label = 'Choose the data for input', \
choices=chipseq_data, initial= chipseq_data[0][0])
chipseq_data.append(["None","None"])
second_input_name = forms.ChoiceField( widget=Select(), label = 'Choose the 2nd data for input', \
choices=chipseq_data, initial= "None")
job_size = forms.ChoiceField(widget=Select(), label="Expected Computation Load",\
choices=[["small", "Small (Local)"], ["medium","Medium (Local Cluster)"],["large","Large (HPC Cluster)"] ,["cloud","AWS Cloud"]], \
initial= 'small')
class RegisterForm(forms.Form):
organization = forms.CharField()
email = forms.EmailField()
#password = forms.CharField( widget=forms.PasswordInput, label="Your Password" )
password1 = forms.CharField(widget=forms.PasswordInput,label="Password")
password2 = forms.CharField(widget=forms.PasswordInput,label="Retype Password")
def clean_password2(self):
password1 = self.cleaned_data.get("password1", "")
password2 = self.cleaned_data["password2"]
if password1 != password2:
raise forms.ValidationError("The two password fields didn't match.")
return password2
class old_bfastForm(forms.Form):
description = forms.CharField()
#email = forms.EmailField()
appname = forms.CharField(widget=forms.HiddenInput,initial='bfast')
availgenome_label = 'Choose one of the following genome as a reference geonome'
availgenome = [['hg18','Human Genome(hg18)'],['hg18-chromosome21', \
'Human Genome (hg18) chromosome 21'],['BGR1','Microbe BGR1 genome']\
,['new-ref-genome','New Genome from a user'],]
Reference_GENOME = forms.ChoiceField( widget=Select(), label = 'Choose Reference Genome' \
,choices=availgenome)
availdataloc = [['work','Work'], ['project','Project']]
Sequence_Location = forms.ChoiceField( widget=Select(), label = \
'Choose Short Reads Location', choices=availdataloc)
machines_label = 'Resource'
machines_list = [['qb','Queen Bee(LONI)'],['ranger','Ranger(XD)'],['kraken','Kraken(XD)'],
['painter','Painter(LONI)'],['fgeuca','FutureGrid(Cloud)'],\
['aws','AWS(Cloud)']]
machine = forms.ChoiceField(widget=Select(), label = machines_label, \
choices=machines_list)
class tophatfusionForm(forms.Form):
description = forms.CharField()
#email = forms.EmailField()
appname = forms.CharField(widget=forms.HiddenInput,initial='tophatfusion')
availgenome_label = 'Choose one of the following genome as a reference geonome'
availgenome = [['hg18','Human Genome(hg19)'], ['new-ref-genome','New Genome from a user']]
Reference_GENOME = forms.ChoiceField( widget=Select(), label = 'Choose Reference Genome' \
,choices=availgenome)
availdataloc = [['cyder','Cyder'], ['work','Work(coming soon)'], \
['project','Project(coming soon)']]
Sequence_Location = forms.ChoiceField( widget=Select(), label = 'Choose Short Reads Location', \
choices=availdataloc)
machines_label = 'Resource'
machines_list = [['cyder','Cyder'], \
['qb','Queen Bee(coming soon)'],\
['ranger','Ranger(coming soon)'], \
['kraken','Kraken(coming soon)'], \
['painter','Painter(coming soon)'],\
['fgeuca','FutureGrid(Cloud,(coming soon))'],\
['aws','AWS(Cloud,(coming soon))']]
machine = forms.ChoiceField(widget=Select(), label=machines_label,\
choices=machines_list)
class RegisterForm(forms.Form):
organization = forms.CharField()
email = forms.EmailField()
password = forms.CharField(widget=forms.PasswordInput,
label="Your Password")
class LoginForm(forms.Form):
email = forms.EmailField()
password = forms.CharField(widget=forms.PasswordInput, label="Password")