def testAddTitle(self):
"""
The addTitle function must add a title to the TitlesAlignments
instance.
"""
mockOpener = mockOpen(read_data=(PARAMS + RECORD0))
with patch.object(builtins, 'open', mockOpener):
readsAlignments = LightReadsAlignments('file.json', DB)
titlesAlignments = TitlesAlignments(readsAlignments)
title = 'Squirrelpox virus 23'
titleAlignments = TitleAlignments(title, 55)
self.assertTrue(title not in titlesAlignments)
titlesAlignments.addTitle(title, titleAlignments)
self.assertTrue(title in titlesAlignments)
def testAddTitle(self):
"""
The addTitle function must add a title to the TitlesAlignments
instance.
"""
mockOpener = mockOpen(read_data=(
dumps(PARAMS) + '\n' + dumps(RECORD0) + '\n'))
with patch.object(builtins, 'open', mockOpener):
reads = Reads()
reads.add(Read('id0', 'A' * 70))
readsAlignments = BlastReadsAlignments(reads, 'file.json')
titlesAlignments = TitlesAlignments(readsAlignments)
title = 'gi|887699|gb|DQ37780 Squirrelpox virus 23'
titleAlignments = TitleAlignments(title, 55)
self.assertTrue(title not in titlesAlignments)
titlesAlignments.addTitle(title, titleAlignments)
self.assertTrue(title in titlesAlignments)
def testAddTitle(self):
"""
The addTitle function must add a title to the TitlesAlignments
instance.
"""
mockOpener = mock_open(read_data=(
dumps(PARAMS) + '\n' + dumps(RECORD0) + '\n'))
with patch.object(builtins, 'open', mockOpener):
reads = Reads()
reads.add(Read('id0', 'A' * 70))
readsAlignments = DiamondReadsAlignments(reads, 'file.json')
titlesAlignments = TitlesAlignments(readsAlignments)
title = 'gi|887699|gb|DQ37780 Squirrelpox virus 23'
titleAlignments = TitleAlignments(title, 55)
self.assertTrue(title not in titlesAlignments)
titlesAlignments.addTitle(title, titleAlignments)
self.assertTrue(title in titlesAlignments)
