def onvalue(self, mo):
value=mo.group(1)
if self.attr_name in self.attr_names:
real_attr_name=self.attr_names[self.attr_name]
setattr(self.cur_obj, real_attr_name, value)
# Synonyms
elif self.attr_name == 'Synonyms':
if self.cur_target:
syn=TargetSynonym(synonym=value, target=self.cur_target)
self.cur_target.syns.append(syn)
else:
syn=DrugSynonym(synonym=value, drug=self.cur_drug)
self.stats['n_drug_syns']+=1
self.cur_obj.drugsynonym_set.add(syn)
syn.save()
# Gene_Name
elif self.attr_name == 'Gene_Name':
self.cur_target.gene_sym=value
try:
self.cur_target.uniprot_id=','.join(self.ug.g2u[value])
except KeyError:
pass
def on_Synonyms(self, row):
syn=TargetSynonym(synonym=row[2], target=self.cur_target)
syn.save()
self.cur_target.synonyms.add(syn)
