def onvalue(self, mo): value=mo.group(1) if self.attr_name in self.attr_names: real_attr_name=self.attr_names[self.attr_name] setattr(self.cur_obj, real_attr_name, value) # Synonyms elif self.attr_name == 'Synonyms': if self.cur_target: syn=TargetSynonym(synonym=value, target=self.cur_target) self.cur_target.syns.append(syn) else: syn=DrugSynonym(synonym=value, drug=self.cur_drug) self.stats['n_drug_syns']+=1 self.cur_obj.drugsynonym_set.add(syn) syn.save() # Gene_Name elif self.attr_name == 'Gene_Name': self.cur_target.gene_sym=value try: self.cur_target.uniprot_id=','.join(self.ug.g2u[value]) except KeyError: pass
def on_Synonyms(self, row): syn=TargetSynonym(synonym=row[2], target=self.cur_target) syn.save() self.cur_target.synonyms.add(syn)