def __init__(self, layerxml, params, prev_layer = None, windowshape = None):
super(InputLayerSW, self).__init__(layerxml, params)
# InputLayerSW must be the first layer
if prev_layer != None:
raise NotImplementedError()
self.data_info = []
for d in layerxml.findall('data'):
data_dir = d.find('dir').text + '/'
self.data_info.append((data_dir))
self.prepro_type = layerxml.find('preprocessing').text
self.windowshape = windowshape
if self.windowshape == None:
#TODO: Parse from layer_xml, not hardcode
self.windowshape = (int(layerxml.find('windowshape/h').text),
int(layerxml.find('windowshape/w').text),
int(layerxml.find('windowshape/d').text))
if not params.load_weights:
self.data = DataSlidingWindow(points=params.pnt_nos)
self.data.load_picked_data(params.shared_op_dir)
for dir in self.data_info:
print 'Adding data from: ' + dir
self.data.add_to_dataset(dir)
self.data.load_data(self.windowshape, shuffle=False)
self.data.save_picked_data(params.shared_op_dir)
params.imshape = self.windowshape
self.out_size = (params.batch_size, params.imshape[2], params.imshape[0], params.imshape[1])
# TODO: Is this in_size correct?
self.in_size = (params.batch_size, params.imshape[2], params.imshape[0], params.imshape[1])
print("InputLayerSW out_size: " + str(self.out_size))
class InputLayerSW(Layer):
type = 'InputLayerSW'
def __init__(self, layerxml, params, prev_layer = None, windowshape = None):
super(InputLayerSW, self).__init__(layerxml, params)
# InputLayerSW must be the first layer
if prev_layer != None:
raise NotImplementedError()
self.data_info = []
for d in layerxml.findall('data'):
data_dir = d.find('dir').text + '/'
self.data_info.append((data_dir))
self.prepro_type = layerxml.find('preprocessing').text
self.windowshape = windowshape
if self.windowshape == None:
#TODO: Parse from layer_xml, not hardcode
self.windowshape = (int(layerxml.find('windowshape/h').text),
int(layerxml.find('windowshape/w').text),
int(layerxml.find('windowshape/d').text))
if not params.load_weights:
self.data = DataSlidingWindow(points=params.pnt_nos)
self.data.load_picked_data(params.shared_op_dir)
for dir in self.data_info:
print 'Adding data from: ' + dir
self.data.add_to_dataset(dir)
self.data.load_data(self.windowshape, shuffle=False)
self.data.save_picked_data(params.shared_op_dir)
params.imshape = self.windowshape
self.out_size = (params.batch_size, params.imshape[2], params.imshape[0], params.imshape[1])
# TODO: Is this in_size correct?
self.in_size = (params.batch_size, params.imshape[2], params.imshape[0], params.imshape[1])
print("InputLayerSW out_size: " + str(self.out_size))
def compute(self, input, params):
self.output = input.reshape((params.batch_size, params.imshape[2], params.imshape[0], params.imshape[1]))
def write_log(self, params):
# TODO: Fix this (I assume the data format was changed at some point)
#tools.write_image(self.data.train_set_x.get_value(), (self.windowshape[0],self.windowshape[1], self.windowshape[2]), params.op_dir + 'train_x_before_preprocess.png')
#tools.write_image_multiple(self.data.train_set_y.get_value(), (1,1), params.pnt_nos, params.op_dir + 'train_y_slice-{0:d}.png')
#tools.write_image(self.data.valid_set_x.get_value(), (self.windowshape[0],self.windowshape[1], self.windowshape[2]), params.op_dir + 'valid_x_before_preprocess.png')
#tools.write_image_multiple(self.data.valid_set_y.get_value(), (1,1), params.pnt_nos, params.op_dir + 'valid_y_slice-{0:d}.png')
if len(self.data.X_names['test']) > 0:
print 'Data format changed'