def evaluate_autoencoder(model_dir, test_data_dir):
weights_file = os.path.join(model_dir, "autoencoder_weights.hdf5")
json_file = os.path.join(model_dir, "autoencoder_model.json")
with open(json_file, 'r') as f:
json_string = f.read()
autoencoder = model_from_json(json_string)
autoencoder.load_weights(weights_file)
originaldata = load_data(test_data_dir)
data = originaldata.astype(np.float32) / 255
data = np.reshape(data, (data.shape[0], ) + data.shape[2:])
decoded = (autoencoder.predict(data) * 255).astype(np.uint8)
# decoded = decoded.reshape(decoded, (decoded.shape[0], 48,64))
gs = gridspec.GridSpec(1, 2)
for i in range(20):
image = decoded[i, :, :, 0]
plt.subplot(gs[0])
plt.imshow(image, interpolation='none')
plt.subplot(gs[1])
plt.imshow(originaldata[i, 0, :, :, 0])
plt.savefig(os.path.join(model_dir, 'plot_' + str(i) + '.png'))
plt.clf()
def set_train_data(self, raw=False):
"""
sets train_data attribute to ADL data correpsonding to the dataset for this experiment
"""
split_by_vid_or_class = 'Split_by_class'
vid_class = 'NonFall'
data = load_data(split_by_vid_or_class = split_by_vid_or_class, raw = raw,\
img_width = self.img_width, img_height = self.img_height, vid_class = vid_class, dset = self.dset)
self.train_data = data
def train_autoencoder(trainingData, outDir):
# Load training data
print("Loading and normalizing data...")
data = load_data(trainingData)
data = np.reshape(data, (data.shape[0], ) + data.shape[2:])
data = data.astype(np.float32) / 255
print("Finished loading data!!")
# Initialize and train model
print("Initlializing model...")
#data_format = backend.image_data_format()
input = Input(shape=(48, 64, 1))
autoencoder_layers = Conv2D(3, 3, padding='same', activation='relu')(input)
autoencoder_layers = MaxPooling2D()(autoencoder_layers)
autoencoder_layers = Conv2D(5, 3, padding='same',
activation='relu')(autoencoder_layers)
autoencoder_layers = MaxPooling2D()(autoencoder_layers)
autoencoder_layers = UpSampling2D()(autoencoder_layers)
autoencoder_layers = Conv2D(3, 3, padding='same',
activation='relu')(autoencoder_layers)
autoencoder_layers = UpSampling2D()(autoencoder_layers)
autoencoder_layers = Conv2D(1, 3, padding='same',
activation='sigmoid')(autoencoder_layers)
autoencoder = Model(inputs=input, outputs=autoencoder_layers)
autoencoder.compile(optimizer='sgd', loss='binary_crossentropy')
print("Done!")
batch_size = 256
nb_epoch = 100
print("Training model...")
weights_file = os.path.join(outDir, "autoencoder_weights.hdf5")
json_file = os.path.join(outDir, "autoencoder_model.json")
tbLogPath = os.path.join(outDir, "tensorboard_logs")
callbacks = [
ModelCheckpoint(filepath=weights_file,
monitor='val_loss',
save_best_only=True),
TensorBoard(log_dir=tbLogPath,
histogram_freq=nb_epoch / 10,
batch_size=batch_size)
]
autoencoder.fit(data,
data,
batch_size,
nb_epoch,
verbose=2,
callbacks=callbacks,
validation_split=0.1)
json_string = autoencoder.to_json()
with open(json_file, "w") as f:
f.write(json_string)
print("Done!")
def train(config):
# Load training data
print("Loading and normalizing data...")
training_data = os.path.join(config.data_dir, "train")
data_type = np.uint8 if config.model_type != ModelType.STATE_VECTOR else np.float32
data = load_data(training_data,
num_of_samples=config.sequences,
dtype=data_type)
data = normalize_data(data, config.model_type)
print("Finished loading data!!")
input_shape = data.shape[2:]
# Initialize and train model
print("Initilalizing model...")
factory = PredNetModelBuilder(config)
factory.set_input_shape(input_shape)
factory.set_tensorboard_verbosity(write_grads=True, write_images=True)
#factory.add_pretrained_autoencoder("C:\\Users\\Alberto\\Projects\\Keras_models\\autoencoder_bb\\autoencoder_model.json",
# "C:\\Users\\Alberto\\Projects\\Keras_models\\autoencoder_bb\\autoencoder_weights.hdf5")
factory.trainable_autoencoder = False
model, callbacks = factory.build_model(config.model_type)
print("Done!")
print("Training model...")
y = np.zeros((data.shape[0], 1), np.float32)
model.fit(data,
y,
config.batch_size,
config.epochs,
verbose=2,
callbacks=callbacks,
validation_split=0.1)
print("Done!")
print("Saving model...")
json_string = model.to_json()
if not os.path.isdir(config.model_dir):
os.mkdir(config.model_dir)
json_file = os.path.join(config.model_dir, "prednet_model.json")
with open(json_file, "w") as f:
f.write(json_string)
print("Done!")
np.save('MLP_WE/mlp_2_weights',
pretrain_model.get_layer('mlp_2').get_weights())
np.save('MLP_WE/mlp_3_weights',
pretrain_model.get_layer('mlp_3').get_weights())
np.save('MLP_WE/mlp_user_embed_weights',
pretrain_model.get_layer('MLP_user_embed').get_weights())
np.save('MLP_WE/mlp_item_embed_weights',
pretrain_model.get_layer('MLP_item_embed').get_weights())
hit_rate_accuracy = evaluation.evaluate_integer_input(
'input/testing_data.npy', pretrain_model, 'hit_rate',
'input/int_mat.npy')
print('MLP produces accuracy rate of: ' + str(hit_rate_accuracy))
if __name__ == '__main__':
try:
interaction_mx = np.load('input/int_mat.npy')
except IOError:
data_management.load_data()
interaction_mx = np.load('input/int_mat.npy')
inputs, labels = data_management.training_data_generation(
'input/training_data.npy', 'input/int_mat.npy', 5)
data_management.load_data(file_path='../data/movielens/ratings.dat')
train_mlp(num_predictive_factors=8,
batch_size=256,
epochs=2,
interaction_mx=interaction_mx,
inputs=inputs,
labels=labels)
num_predictive_factors = int(arg)
print "Number of predictive factors is " + str(num_predictive_factors)
elif opt in ("-b", "--bsize"):
batch_size = int(arg)
print "Batch size is " + str(batch_size)
elif opt in ("-e", "--epoch"):
num_pretrain_epochs = int(arg)
print "number of training epochs for pretrain and full model is " + str(num_pretrain_epochs)
num_final_epochs = num_pretrain_epochs
data_management.load_data()
interaction_mx = np.load('input/int_mat.npy')
inputs, labels = data_management.training_data_generation('input/training_data.npy', 'input/int_mat.npy')
labels = keras.utils.to_categorical(labels, 6)
# pretrain MLP
MLP.train_mlp(num_predictive_factors=num_predictive_factors, batch_size=batch_size, epochs=num_pretrain_epochs,
interaction_mx=interaction_mx, inputs=inputs, labels=labels)
# pretrain GMF
GMF.train_gmf(num_predictive_factors=num_predictive_factors, batch_size=batch_size, epochs=num_pretrain_epochs,
interaction_mx=interaction_mx, inputs=inputs, labels=labels)
# check out the shared vision guide at https://keras.io/getting-started/functional-api-guide/
user_input = Input(shape=(1,), name='user_input')
item_input = Input(shape=(1,), name='item_input')
sequences = tokenizer.texts_to_sequences(articles)
# padding the sequences
padded = pad_sequences(sequences,
maxlen=max_length,
padding=padding_type,
truncating=trunc_type)
return padded
if __name__ == "__main__":
# load data
my_articles, my_labels = load_data(data_path=DATA_PATH, file_name=FILENAME)
# clearn the data
my_articles = clean_articles(articles=my_articles, stopwords=STOPWORDS)
# split articles
train_articles, validation_articles, test_articles = split_articles(
articles=my_articles, train_portion=TRAIN_PORTION, test_size=TEST_SIZE)
# split labels
train_labels, validation_labels, test_labels = split_labels(
labels=my_labels, train_portion=TRAIN_PORTION, test_size=TEST_SIZE)
print("Train Articles:", len(train_articles))
print("validation Articles:", len(validation_articles))
print("Test Articles:", len(test_articles))
__author__ = 'Rex'
# usage:
# python inspect_blockdata [height]
import sys
sys.path.append('..')
import data_management as dm
if __name__ == "__main__":
try:
height = int(sys.argv[1])
exchange = dm.load_data(str(height), dm.BLOCKS_FOLDER)
except:
exchange = dm.pop_exchange()
print exchange.exchange
def evaluate(config):
if config.model_type == ModelType.PREDNET or config.model_type == ModelType.SINGLE_PIXEL_ACTIVATION:
PredNet = PredNetVanilla
elif config.model_type == ModelType.CONV_PREDNET:
PredNet = ConvPredNet
elif config.model_type == ModelType.AMPLIF_ERROR:
PredNet = AmplifiedErrorPredNet
elif config.model_type == ModelType.STATE_VECTOR:
PredNet = RNN
elif config.model_type == ModelType.CONCAT_PREDNET:
PredNet = ConcatPredNet
weights_file = os.path.join(results_folder,
str(config) + "\\prednet_weights.hdf5")
json_file = os.path.join(results_folder,
str(config) + "\\prednet_model.json")
batch_size = 8
# load test data
test_set_dir = os.path.join(config.data_dir, "test")
data_type = 'uint8' if config.model_type != ModelType.STATE_VECTOR else 'float32'
data = load_data(test_set_dir, dtype=data_type)
X_test = normalize_data(data, config.model_type)
nt = X_test.shape[1]
# Load trained model
with open(json_file, 'r') as f:
json_string = f.read()
# add custom layers definitions
if config.model_type != ModelType.STATE_VECTOR and config.model_type != ModelType.CONCAT_PREDNET:
custom_objects = {PredNet.__name__: PredNet}
elif config.model_type == ModelType.STATE_VECTOR:
custom_objects = {
StateVectorPredNetCell.__name__: StateVectorPredNetCell
}
elif config.model_type == ModelType.CONCAT_PREDNET:
custom_objects = {
PredNetVanilla.__name__: PredNetVanilla,
ConcatPredNet.__name__: ConcatPredNet
}
model = model_from_json(json_string, custom_objects=custom_objects)
model.load_weights(weights_file)
# Create testing model (to output predictions)
layer_config = model.layers[1].get_config()
if config.model_type == ModelType.STATE_VECTOR:
cell_config = layer_config['cell']['config']
cell_config['output_mode'] = 'prediction'
layer_config['cell'] = StateVectorPredNetCell(**cell_config)
test_prednet = PredNet(weights=model.layers[1].get_weights(),
**layer_config)
else:
layer_config['output_mode'] = 'prediction'
test_prednet = PredNet(weights=model.layers[1].get_weights(),
**layer_config)
test_prednet.extrap_start_time = config.infer_pred_start
test_prednet.extrap_end_time = config.infer_pred_end
input_shape = list(model.layers[0].batch_input_shape[1:])
input_shape[0] = nt
inputs = Input(shape=tuple(input_shape))
predictions = test_prednet(inputs)
test_model = Model(inputs=inputs, outputs=predictions)
# make predictions
X_hat = test_model.predict(X_test, batch_size)
if config.model_type != ModelType.STATE_VECTOR:
data_format = layer_config[
'data_format'] if 'data_format' in layer_config else layer_config[
'dim_ordering']
if data_format == 'channels_first':
X_test = np.transpose(X_test, (0, 1, 3, 4, 2))
X_hat = np.transpose(X_hat, (0, 1, 3, 4, 2))
X_test = (X_test * 255).astype(np.uint8)
X_hat = (X_hat * 255).astype(np.uint8)
else:
X_test, X_hat = image_from_state_vector(
X_test), image_from_state_vector(X_hat)
# Compare MSE of PredNet predictions vs. using last frame. Write results to prediction_scores.txt
scores_file = os.path.join(results_folder,
str(config) + '\\prediction_scores.txt')
mse_model, mse_prev = compute_and_save_mse(X_test, X_hat, scores_file)
plots_dir = os.path.join(results_folder,
str(config) + '\\prediction_plots\\')
plot_predictions(X_test, X_hat, plots_dir, config)
def __signature__project(dsv, seed, perplexity):
return hash(dsv[:5].tostring()), seed, perplexity
def project(dsv, seed=1, perplexity=30):
for item in project.cache.items():
if item[1][0].size == dsv.shape[0]:
return item[1]
temp = TSNE(2, perplexity, random_state=seed).fit_transform(dsv)
project.cache[signature] = (temp.T[0], temp.T[1])
return project.cache[signature]
project.cache = load_data("projection_cache")
def plot_clusters(projection,
clustering): # cluster = None for simply plotting projection
try:
clustering = clustering.labels_
except AttributeError:
pass
plt.scatter(*projection, c=clustering)
plt.show()
def complement_customers(df, a_clusterings, b_clusterings):
groups = split_to_groups(df)
try:
