def construct_consolidation(input_data, mapping):
"""
construct an consolidation object
:param input_data: json data
:param mapping: mapping dict
:return: an consolidation orm object
"""
return fill_object(Study(), flattenDict(input_data),
mapping['Consolidation'])
def construct_ctlog(input_data, mapping):
"""
construct an ctlog object
:param input_data: json data
:param mapping: mapping dict
:return: an ctlog orm object
"""
return fill_object(CTLogPattern(), flattenDict(input_data),
mapping['CTlog'])
def insert_connectivitylist(db_session, input_data, mapping, device_data):
"""
Insert data into connectivity list
:param db_session:
:param input_data:
:param mapping:
:param device_data:
:return:
"""
connectivitylist = fill_object(ConnectivityList(), flattenDict(input_data),
mapping['connectivityList'])
if not isinstance(device_data['sdmKey'], int):
return
if device_data['sdmKey'] == 0:
return
setattr(connectivitylist, 'supported_device_id', device_data['sdmKey'])
# Check integration mode if exists, if not insert it
im = input_data['integrationMode']
mod = input_data['modality']
im_q = db_session.query(IntegrationMode).filter(
IntegrationMode.integration_mode == im,
IntegrationMode.modality == mod)
if im_q.count() == 0:
new_integrationmode = fill_object(IntegrationMode(), input_data,
mapping['IntegrationMode'])
insert_object(db_session, new_integrationmode)
integrationmode_id = new_integrationmode.id
else:
integrationmode_id = im_q.first().id
setattr(connectivitylist, 'integration_mode_id', integrationmode_id)
if 'expectedFiles' in input_data.keys():
for pattern in input_data['expectedFiles']:
messagepattern = MessagePattern()
messagepattern.message_type = pattern
q = db_session.query(MessagePattern).filter(
MessagePattern.message_type == messagepattern.message_type)
connectivitylist.messages_pattern.append(
messagepattern if q.count() == 0 else q.first())
if 'functionalities' in input_data.keys():
for func in input_data['functionalities']:
functionality = DWFunctionality()
functionality.functionality = func
q = db_session.query(DWFunctionality).filter(
DWFunctionality.functionality == functionality.functionality)
connectivitylist.functionalities.append(
functionality if q.count() == 0 else q.first())
insert_object(db_session, connectivitylist)
def insert_ctlog(db_session, input_data, mapping):
"""
Insert ct log data
:param db_session: sqlalchemy session
:param input_data: data in dict format
:param mapping: mapping in dict for flatten data
:return:
"""
ctlogpattern = fill_object(CTLogPattern(), flattenDict(input_data),
mapping['CTlog'])
db_session.add(ctlogpattern)
def insert_consolidation(db_session, input_data, mapping):
"""
Insert consolidation data
:param db_session:
:param input_data:
:param mapping:
:return:
"""
consolidation = fill_object(Study(), flattenDict(input_data),
mapping['Consolidation'])
db_session.add(consolidation)
def upsert_consolidation(db_session, input_data, mapping):
"""
Insert or update new consolidation data, delete dosimetric test associated to old study
:param db_session:
:param input_data:
:param mapping:
:return:
"""
# Create new object that represent a consolidation/study/dosi_data
_flattened_data = flattenDict(input_data)
new_data = fill_object(Study(), _flattened_data, mapping['Consolidation'])
# Check if probe are in incremental ways, if not
if 'data.resultRows.dt_last_update' not in _flattened_data:
db_session.bulk_save_objects([new_data])
return
# check if dt_created has more than 1 day of diff with dt_last_update, if so, we enter into update mode, else
# data are inserted without other processing
if (parse(_flattened_data['data.resultRows.dt_last_update']).date() -
new_data.start_date.date()).days > 0:
_old_data = db_session.query(Study).filter(
Study.serial_number == new_data.serial_number,
Study.encrypted_siuid == new_data.encrypted_siuid)
# If found previous data, we update them & remove old processing data
if _old_data.count() != 0:
# delete old data from resulting test
db_session.query(Dosimetric).filter(Dosimetric.study_id == _old_data.first().id). \
delete(synchronize_session=False)
# update study entry
values_for_update = new_data.tojson()
if 'id' in values_for_update:
del values_for_update['id'] # remove id who is null
values_for_update[
'status'] = 'N' # set study to N because is Null in newly create object
_old_data.update(values=values_for_update,
synchronize_session=False)
else:
# insert the new one
db_session.bulk_save_objects([new_data])
else:
# insert new consolidation
db_session.bulk_save_objects([new_data])
def insert_dicominput(db_session, input_data, mapping):
"""
Insert dicom input pattern
:param db_session:
:param input_data:
:param mapping:
:return:
"""
data = flattenDict(input_data)
DICOMINPUT = fill_object(DicomInput(), data, mapping['Dicominput'])
_pattern_key = 'data.resultRows.pattern'
for pattern in data[_pattern_key].split(','):
_pattern = {
_pattern_key + "." + str(i): elem
for (i, elem) in enumerate(pattern.split('_'))
}
if len(_pattern) != 7:
return
dicompattern_tmp = fill_object(DicomPattern(), data,
mapping["Dicompattern"])
DICOMPATTERN = fill_object(dicompattern_tmp, _pattern,
mapping["Dicompattern"])
# DICOMPATTERN = fill_object(DicomPattern(), _pattern, mapping["Dicompattern"])
DICOMPATTERN.hash = DICOMPATTERN._hash()
dp_q = _check_pattern(db_session, DICOMPATTERN)
DICOMINPUTPATTERN = fill_object(DicomInputPattern(), _pattern,
mapping['Dicominputpattern'])
if dp_q.count() == 0:
insert_object(db_session, DICOMPATTERN)
DICOMINPUTPATTERN.dicompattern = DICOMPATTERN
else:
DICOMINPUTPATTERN.dicompattern = dp_q.first()
DICOMINPUT.dicom_patterns.append(DICOMINPUTPATTERN)
db_session.add(DICOMINPUT)
def upsert_innovalog(db_session, input_data, mapping):
"""
Insert innovalog data
:param db_session: sqlalchemy session
:param input_data: data in dict format (comming from pymongo
:param mapping: dict that contain mapping for flatten dict
:return:
"""
innovalog = fill_object(InnovaLogPull(), flattenDict(input_data),
mapping['Innovalog'])
_already_in_base = _check_innovalog(db_session, innovalog)
if not _already_in_base.count() > 0: # if not inserted previously
db_session.add(innovalog)
elif _already_in_base.first(
).measure_date < innovalog.measure_date: # update entry
_already_in_base.first().datetime_first_fail = None
_already_in_base.first().datetime_last_fail = None
_already_in_base.first().status = 'N'
update_object(db_session,
_already_in_base.first(),
innovalog.__dict__.copy(),
exclude=['id', '_sa_instance_state'])
def upsert_device(db_session, input_data, mapping):
"""
update or insert device
:param db_session:
:param input_data:
:param mapping:
:return:
"""
device = fill_object(SupportedDevice(), flattenDict(input_data),
mapping['device'])
try:
if not isinstance(int(device.id), int):
return
except:
return
# sdm key can be equal to 0 for temporary device that are not yet integrate
if device.id == 0:
return
if device.id is not None:
q = db_session.query(SupportedDevice).filter(
SupportedDevice.id == int(device.id))
if q.count() != 0:
for att in [
'is_deleted', 'characteristics', 'alternate_name',
'last_update'
]:
if getattr(q.first(), att) is None and getattr(
device, att) is not None:
setattr(q.first(), att, getattr(device, att))
else:
db_session.add(device)
db_session.flush()
def insert_ae(db_session, input_data, mapping):
"""
insert application entity (only with sdm_key and serial_number filled
:param db_session:
:param input_data:
:param mapping:
:return:
"""
if 'sdmKey' not in input_data.keys():
return None
data = flattenDict(input_data)
# construct current ae object with input data
new_ae = fill_object(ApplicationEntity(), data, mapping['AE'])
new_ae.is_last = True
# search for the same ae with sn, sdmkey and last_updated
last_ae = db_session.query(ApplicationEntity).filter(
ApplicationEntity.local_ae_id == new_ae.local_ae_id,
ApplicationEntity.serial_number == new_ae.serial_number,
ApplicationEntity.is_last == True)
# if ftpconnection is effective
ftpco = []
if new_ae.ftp_connection_type is not None:
if "ftpCtConnection" in input_data.keys(
) or "ftpInnovaConnection" in input_data.keys():
ftpconnection = fill_object(FTPconnection(), data,
mapping['FTPCon'])
ftpconnection.hash = ftpconnection._hash()
_ftpcon_in_base = _check_ftpco(db_session, ftpconnection)
ftpco.append(ftpconnection if _ftpcon_in_base.count() ==
0 else _ftpcon_in_base.first())
intemode = []
# if integration mode is defined (only VALIDATED* or DEVICE ALREADY KNOW are insert)
if 'modalityIntegrationMode' in input_data.keys():
for item in input_data['modalityIntegrationMode']:
if "integrationRequestIssue" in item.keys():
if item['integrationRequestIssue'][-1]['validationResult'].startswith('VALIDATED') or \
item['integrationRequestIssue'][-1]['validationResult'] == 'DEVICE ALREADY KNOWN':
integrationmode = fill_object(IntegrationMode(),
flattenDict(item),
mapping['IntegrationMode'])
_req_im = _check_im(db_session, integrationmode)
intemode.append(integrationmode if _req_im.count() ==
0 else _req_im.first())
else:
integrationmode = fill_object(IntegrationMode(),
flattenDict(item),
mapping['IntegrationMode'])
_req_im = _check_im(db_session, integrationmode)
intemode.append(integrationmode if _req_im.count() ==
0 else _req_im.first())
# in case of not first revision
if last_ae.count() == 0:
new_ae.ftp_connection.extend(ftpco)
new_ae.integration_mode.extend(intemode)
insert_object(db_session, new_ae)
else:
# check if strictly equality, else insert it
_changed = False
# test if hash of ae are different, if yes change tag to True
if new_ae._hash() != last_ae.first()._hash():
_changed = True
# test when ftp con are not null, if they are same
if len(ftpco) != 0 and len(last_ae.first().ftp_connection) != 0:
if ftpco[0].hash != last_ae.first().ftp_connection[0].hash:
_changed = True
# if one ae have ftp con and not other, tag
if len(ftpco) != len(last_ae.first().ftp_connection):
_changed = True
# test if integration mode is same
if str(sorted([elem.integration_mode for elem in intemode])) != str(
sorted([
elem.integration_mode
for elem in last_ae.first().integration_mode
])):
_changed = True
# if we have detected change on ae (by testing tag), we add relationship now and insert it
if _changed:
last_ae.first().is_last = False
new_ae.ftp_connection.extend(ftpco)
new_ae.integration_mode.extend(intemode)
insert_object(db_session, new_ae)
def insert_customer(db_session, input_data, mapping):
"""
Insert customer revision, with custom dict & ....
:param db_session:
:param input_data:
:param mapping:
:return:
"""
new_customer = fill_object(Customer(), flattenDict(input_data),
mapping['Customer'])
new_customer.is_last = False
# seach for a custome with same rev number
cust_q = _check_customer(db_session, new_customer)
# Only insert this customer revision if he doesn't exist
if cust_q.count() == 0:
# Add custom dictionary if one is present into data
if 'customDictionaries' in input_data.keys():
for item in input_data['customDictionaries']:
cust_dict = fill_object(CustomeDictionary(), flattenDict(item),
mapping['CustomeDictionary'])
custdict_q = _check_customdictionary(db_session, cust_dict)
new_customer.custome_dictionarys.append(
cust_dict if custdict_q.count() ==
0 else custdict_q.first())
# Add workaround if one is present into data
if 'workArounds' in input_data.keys():
for name in input_data['workArounds']:
wa = WorkAround()
setattr(wa, "name", name)
wa_q = db_session.query(WorkAround).filter(
WorkAround.name == name)
new_customer.workarounds.append(wa if wa_q.count() ==
0 else wa_q.first())
last_customer = db_session.query(Customer).filter(
Customer.serial_number == new_customer.serial_number,
Customer.is_last == True)
if last_customer.count() == 0:
new_customer.is_last = True
else:
# if revision number from last customer is below new one, set is_last to true to new one and
# false to previous
if float(last_customer.first().revision_number) < float(
new_customer.revision_number):
last_customer.first().is_last = False
new_customer.is_last = True
new_customer.is_monitored = last_customer.first().is_monitored
else:
# if the new customer rev num is not the last, search the revnum-1 the new one and take
# the is_monitored status flag
previous_customer = db_session.query(Customer).filter(
Customer.serial_number == new_customer.serial_number,
Customer.revision_number == (new_customer.revision_number -
1))
if previous_customer.count() != 0:
new_customer.is_monitored = previous_customer.first(
).is_monitored
insert_object(db_session, new_customer)