def insertDomain(hitInfo):
'''
A helper function to insert information into the *domain* table.
'''
# collect info needed to insert into domains table
domainInfo = [(hitInfo["gi"], hitInfo["domain"], hitInfo["start"], \
hitInfo["end"], hitInfo["sequence"], hitInfo["score"])]
# insert into domains db
databaseMethods.domainDatabaseInsert(domainInfo, databaseName, domainTable)
def insertDomain(hitInfo):
'''
A helper function to insert information into the *domain* table.
'''
# collect info needed to insert into domains table
domainInfo = [(hitInfo["gi"], hitInfo["domain"], hitInfo["start"], \
hitInfo["end"], hitInfo["sequence"], hitInfo["score"])]
# insert into domains db
databaseMethods.domainDatabaseInsert(domainInfo, databaseName, domainTable)
def insertHSP(HSP, hit):
'''
Adds HSP to domainTable, helper function for getHSPs
'''
# collect info needed to insert into domains table
# the last element of tuple is sequence, after removing gaps ("_")
# and capitalizing all letters
domainInfo = [(hit.id, queryResult.id, HSP.hit_start, HSP.hit_end, \
(str(HSP.hit.seq).upper()).replace("-", "")), ]
# insert into domains db
databaseMethods.domainDatabaseInsert(domainInfo, databaseName, domainTable)
def insertHSP(HSP, hit):
'''
Adds HSP to domainTable, helper function for getHSPs
'''
# collect info needed to insert into domains table
# the last element of tuple is sequence, after removing gaps ("_")
# and capitalizing all letters
domainInfo = [(hit.id, queryResult.id, HSP.hit_start, HSP.hit_end, \
(str(HSP.hit.seq).upper()).replace("-", "")), ]
# insert into domains db
databaseMethods.domainDatabaseInsert(domainInfo, databaseName, domainTable)
